| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yhhU [C]
Identifier: 119774256
GI number: 119774256
Start: 1370733
End: 1371587
Strand: Direct
Name: yhhU [C]
Synonym: Sama_1119
Alternate gene names: 119774256
Gene position: 1370733-1371587 (Clockwise)
Preceding gene: 119774255
Following gene: 119774258
Centisome position: 31.83
GC content: 55.2
Gene sequence:
>855_bases ATGCCCCATTCGATCACCGACCGCGGTTTAACCCTGACCTTGACCCTGGTGACATTGCCCGGGCTCAAGGATGTGGGAGA GGAGATGGAGCAGTTGGCGCATCGCTGCAGTCACTGGCTCAGCGATGATGAGCTGGCCCGCATTGGCAGAGCGACCTTAC CCGGTCTGTCACTGCGACAACGCTTGGTTAGACTGTGTCTCAGAGCGGAGCTTGCACGCCAGACGCAGATGACTCCCGAT GCGTTTCGTTTCGATTACGGCCCTCAGGGCAAGCCGGAATTGCGACGGCAACAAGGCGGCCCCTTTGCCTTTAACCTCAG CCATAGCGGTGACAGGCTGCTGCTGGCGGTGATTAGTGGGCATGACGACAGATGCGAATATAACAACGACTTGTATCTTG GTGTGGATATAGAGCGTAAACGCACCAACACCGATATCAACGCCATTTACCGCCACTATTTCTCGGCCCCGGAACAGGCT TATCTGGTGTCACTGGATAACGCCCAAAAGCGAGACGCCTTTTTTGATTTGTGGGCGTTAAAGGAGTCGTATATCAAGGC AACGGGCAGGGGGCTGGCCGAGGGGTTGCACAGCTTTGCCTTCGACCTTGAACAGGCCACTGCTTGTGATAAAGAGGGTT TTAAGCAGTTCTATCAGGGGCTTGAACCAGCAATGCTCTCGCAGCATCAGGGGGATATTCGCTGGCAATCCTGGCTGGGG CATATAGACAGTGACTATCGCGTGGCCGTTACCCTGGGAGCCTGTGGTGAAGTTGGCGCAGAACCGACGCTGACGCTGAC ACAGCACTCATTGCACAGTTTGCTGAGCGAGTTCAATTCTCACATTCCGCTTTAA
Upstream 100 bases:
>100_bases AGGGCGCTCGATACAGGCGATAAGGCTCCGAAACCCGGGCCGTGTCGGTTATACTCTGTCAGCCGTTTTATGCCTTTTTT ATCAGCCACGCGAGTAGCCA
Downstream 100 bases:
>100_bases CGCTCAAGCTGTGCTTTAACGCTCAAGTCGTTGCTTCAATCTTCAATCGTTTCCCAAAAATAAAGCAGCCAGATGGCTGC TTTATTTGTTGCCTTAAAGC
Product: phosphopantetheinyl transferase-like protein
Products: adenosine 3',5'-bisphosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MPHSITDRGLTLTLTLVTLPGLKDVGEEMEQLAHRCSHWLSDDELARIGRATLPGLSLRQRLVRLCLRAELARQTQMTPD AFRFDYGPQGKPELRRQQGGPFAFNLSHSGDRLLLAVISGHDDRCEYNNDLYLGVDIERKRTNTDINAIYRHYFSAPEQA YLVSLDNAQKRDAFFDLWALKESYIKATGRGLAEGLHSFAFDLEQATACDKEGFKQFYQGLEPAMLSQHQGDIRWQSWLG HIDSDYRVAVTLGACGEVGAEPTLTLTQHSLHSLLSEFNSHIPL
Sequences:
>Translated_284_residues MPHSITDRGLTLTLTLVTLPGLKDVGEEMEQLAHRCSHWLSDDELARIGRATLPGLSLRQRLVRLCLRAELARQTQMTPD AFRFDYGPQGKPELRRQQGGPFAFNLSHSGDRLLLAVISGHDDRCEYNNDLYLGVDIERKRTNTDINAIYRHYFSAPEQA YLVSLDNAQKRDAFFDLWALKESYIKATGRGLAEGLHSFAFDLEQATACDKEGFKQFYQGLEPAMLSQHQGDIRWQSWLG HIDSDYRVAVTLGACGEVGAEPTLTLTQHSLHSLLSEFNSHIPL >Mature_283_residues PHSITDRGLTLTLTLVTLPGLKDVGEEMEQLAHRCSHWLSDDELARIGRATLPGLSLRQRLVRLCLRAELARQTQMTPDA FRFDYGPQGKPELRRQQGGPFAFNLSHSGDRLLLAVISGHDDRCEYNNDLYLGVDIERKRTNTDINAIYRHYFSAPEQAY LVSLDNAQKRDAFFDLWALKESYIKATGRGLAEGLHSFAFDLEQATACDKEGFKQFYQGLEPAMLSQHQGDIRWQSWLGH IDSDYRVAVTLGACGEVGAEPTLTLTQHSLHSLLSEFNSHIPL
Specific function: Probably transfers the 4'-phosphopantetheine moiety from coenzyme A (CoA) to a serine residue of a carrier protein domain [H]
COG id: COG2091
COG function: function code H; Phosphopantetheinyl transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the P-Pant transferase superfamily. Gsp/sfp/hetI/acpT family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008278 - InterPro: IPR004568 - ProDom: PD004282 [H]
Pfam domain/function: PF01648 ACPS [H]
EC number: NA
Molecular weight: Translated: 32028; Mature: 31897
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHSITDRGLTLTLTLVTLPGLKDVGEEMEQLAHRCSHWLSDDELARIGRATLPGLSLRQ CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH RLVRLCLRAELARQTQMTPDAFRFDYGPQGKPELRRQQGGPFAFNLSHSGDRLLLAVISG HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHCCCCEEEEECCCCCEEEEEEECC HDDRCEYNNDLYLGVDIERKRTNTDINAIYRHYFSAPEQAYLVSLDNAQKRDAFFDLWAL CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH KESYIKATGRGLAEGLHSFAFDLEQATACDKEGFKQFYQGLEPAMLSQHQGDIRWQSWLG HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHC HIDSDYRVAVTLGACGEVGAEPTLTLTQHSLHSLLSEFNSHIPL CCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PHSITDRGLTLTLTLVTLPGLKDVGEEMEQLAHRCSHWLSDDELARIGRATLPGLSLRQ CCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH RLVRLCLRAELARQTQMTPDAFRFDYGPQGKPELRRQQGGPFAFNLSHSGDRLLLAVISG HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHCCCCEEEEECCCCCEEEEEEECC HDDRCEYNNDLYLGVDIERKRTNTDINAIYRHYFSAPEQAYLVSLDNAQKRDAFFDLWAL CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH KESYIKATGRGLAEGLHSFAFDLEQATACDKEGFKQFYQGLEPAMLSQHQGDIRWQSWLG HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHC HIDSDYRVAVTLGACGEVGAEPTLTLTQHSLHSLLSEFNSHIPL CCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Coenzyme A; apo-[acyl carrier protein] [C]
Specific reaction: Coenzyme A + apo-[acyl carrier protein] = adenosine 3',5'-bisphosphate + [acyl carrier protein] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]