| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is fusA [C]
Identifier: 119774255
GI number: 119774255
Start: 1368423
End: 1370471
Strand: Direct
Name: fusA [C]
Synonym: Sama_1118
Alternate gene names: 119774255
Gene position: 1368423-1370471 (Clockwise)
Preceding gene: 119774254
Following gene: 119774256
Centisome position: 31.78
GC content: 55.3
Gene sequence:
>2049_bases ATGGCTGAGTACCAGACCGCGAGGATCCGCAACTTTGCCTTGCTTGGGCATACCGGAGCGGGTAAGTCCTCGCTGCTTGA GGCACTGCTTTATGGTGCCAGGGTAATAAACCAGCGGGGCAGGGTGGATAAGGGCACAAATCATGCCGATTTCACTGCCC AGGAAAAAGCCCACCAACATAGTCTCGAACCATCCTTCCTCAATCTAGATTTCGACGAACACCACATCAACCTTATTGAT ACCCCCGGATTACCCGACTTTTTCGGACGCGCGCTCTTACCTTTGCCAGCGGTAGAATCTGTACTCTTGGTGGTGAATGC CGCCACAGGGATAGAGCCGGTTACTGCCCGAGCGTTTGAAGCTGCCCGGGCACAGGGCAAAGTGGTGTGTATTTGTGTGA ACCACATCGATGGGCATTTGGATAAGCTGCCCGCCATTATTGAAGAGCTGCAAACCACCTTCGGCCCCCGCTGTCTGCCG GTTAATCTGCCGTCTGCCGATGGAAACGATGTGGTTGACTGCTATTTGCACTGCGAAGATACCCGCCCCACGCTTTTTTC CCAGGCCGCCTCGGCGCGGGATGAGCTGGTGGACACAGTGCTGGAAGAAGATGAAGCCCTGATGACCCTGTATTTGGAGC AGGGTGAAATGCTCAGTGCCGAGCAGCTCCATGAGCCTTTGGAAACGGCACTCAGAATGGGGCATCTGGTGCCTATTTGC TTTACCAGTGCAGAGCTTGATATCGGCATCGCCTCCTTGCTTGAAATCATGGTTAAGCTGATGCCCAGTCCGCTGGAGGC CAATCCGCCGCAGTTTATCAAAGGTTTCGGTGACAAGGCCGTGCCGGTTGATGTGACCCAAAGCCCGGATGACCATGTGC TGGCACAGGTGTTCAGGGTGGGCATAGACCCCTATTTTGGTCGGGTGGCTGTGTTCCGTTTGTATCAGGGCACGCTGGAA GCGGGTATGCGGCTTTTTATTGGTGCCGACCGCAAGCCAGTGAAAGTGGCCCACCTTATCAAGCTTCAGGGCGCCGAAAC CACGGAGGTAGAAAAGGCCATTCCCGGCGATATCTGCGCGCTTTGCAAAATTGATGAGCTGGAAGTGGGTTCGGTTTTGC ACGACAGCCACGATGAAGACGAGTTCCATCTGCGGGAGCTGAAAATGCCCCAGCCGATTTTTGGTTTGGCGGTATCGCCC AAACGCCGTGGCGATGAGCAGAAAATTGCCGAGGTGCTGGCCAAACTGATAGCCGAAGATCCCAGCCTAGCGGTGTCGCA AAATGATGCGGAAGGCCAGACAGTGCTGAGCGGTCTTGGGGATCTGCATTTGCAGATTGCACTGGAAAAGGCCCAGAGCG TGTTCAGGGTGGATATGGAAACCTGCAAGCCAGCGGTGGCTTATCGGGAAACCGTGTGTAAGGCAGCAACGGCCCGTTAT CGTCACAAGAAGCAGTCCGGTGGCGCCGGGCAATTTGGCGAAGTGGAGCTGACCGTTGAGCCTTTACCAAGGGGACAAGG ATTTGAATTTGTCTCCAAAGTAGTTGGCGGCGCCGTGCCCACCCAGTTTATTCCTGCGGTGGAAAAAGGTGTGCGTGAAG CGCTCAAGGTTGGGCGACTTGGCGGTTATCCGGTGGAAGATGTGCGCGTTACCGTGCTCGATGGTAAGCACCACAGCGTT GACTCCAAGGAGATTGCCTTTGTGATGGCCGGTAAAAAAGCCTTCTATGAAGCCTTTTTGCAGGCAAACCCGGTGATTTT GGAGCCGCTGGTGTCGATGGAGATTCTGGTGAGTGCCGAGGATGTGGGTGATATAACCGGGCATCTCAGTTCCAGCCGCG CCATGGTTTGCGGTACCGAAGCCCGACGTGATGGCAAGGTAAAGGTATTGGCCGAAGCGCCGCTGTCCACCGTGGATGAC TACGCGACCCGGCTTAAGTCCATGACTTCGGGCGAAGGTGAATTCACCTTAAGCTTTGCCCGCTATGAGGTTGTTCCCCC AGCGGTGCAGCAAAGCCTGCTGCGTACCATAGAGGATAAAGACGACTAA
Upstream 100 bases:
>100_bases GCCCGGCTGGTTGGTCTTGTGACCTCAGTCAAATCCTGTGTTCATTCTCAGAACTATACTGCTTTTGTAGCCAAGTAGAA TGTGACACAAGGAGGCCGTT
Downstream 100 bases:
>100_bases ATGTAACCTGTTTGCCAGCAGTTTACAGACATCTCTCCCAAACCTTTGCGGCGCTTTGTGGACCTCCCCCGGCGCCGCTT TTTTATGTCTTCGGTTTGCG
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: NA
Number of amino acids: Translated: 682; Mature: 681
Protein sequence:
>682_residues MAEYQTARIRNFALLGHTGAGKSSLLEALLYGARVINQRGRVDKGTNHADFTAQEKAHQHSLEPSFLNLDFDEHHINLID TPGLPDFFGRALLPLPAVESVLLVVNAATGIEPVTARAFEAARAQGKVVCICVNHIDGHLDKLPAIIEELQTTFGPRCLP VNLPSADGNDVVDCYLHCEDTRPTLFSQAASARDELVDTVLEEDEALMTLYLEQGEMLSAEQLHEPLETALRMGHLVPIC FTSAELDIGIASLLEIMVKLMPSPLEANPPQFIKGFGDKAVPVDVTQSPDDHVLAQVFRVGIDPYFGRVAVFRLYQGTLE AGMRLFIGADRKPVKVAHLIKLQGAETTEVEKAIPGDICALCKIDELEVGSVLHDSHDEDEFHLRELKMPQPIFGLAVSP KRRGDEQKIAEVLAKLIAEDPSLAVSQNDAEGQTVLSGLGDLHLQIALEKAQSVFRVDMETCKPAVAYRETVCKAATARY RHKKQSGGAGQFGEVELTVEPLPRGQGFEFVSKVVGGAVPTQFIPAVEKGVREALKVGRLGGYPVEDVRVTVLDGKHHSV DSKEIAFVMAGKKAFYEAFLQANPVILEPLVSMEILVSAEDVGDITGHLSSSRAMVCGTEARRDGKVKVLAEAPLSTVDD YATRLKSMTSGEGEFTLSFARYEVVPPAVQQSLLRTIEDKDD
Sequences:
>Translated_682_residues MAEYQTARIRNFALLGHTGAGKSSLLEALLYGARVINQRGRVDKGTNHADFTAQEKAHQHSLEPSFLNLDFDEHHINLID TPGLPDFFGRALLPLPAVESVLLVVNAATGIEPVTARAFEAARAQGKVVCICVNHIDGHLDKLPAIIEELQTTFGPRCLP VNLPSADGNDVVDCYLHCEDTRPTLFSQAASARDELVDTVLEEDEALMTLYLEQGEMLSAEQLHEPLETALRMGHLVPIC FTSAELDIGIASLLEIMVKLMPSPLEANPPQFIKGFGDKAVPVDVTQSPDDHVLAQVFRVGIDPYFGRVAVFRLYQGTLE AGMRLFIGADRKPVKVAHLIKLQGAETTEVEKAIPGDICALCKIDELEVGSVLHDSHDEDEFHLRELKMPQPIFGLAVSP KRRGDEQKIAEVLAKLIAEDPSLAVSQNDAEGQTVLSGLGDLHLQIALEKAQSVFRVDMETCKPAVAYRETVCKAATARY RHKKQSGGAGQFGEVELTVEPLPRGQGFEFVSKVVGGAVPTQFIPAVEKGVREALKVGRLGGYPVEDVRVTVLDGKHHSV DSKEIAFVMAGKKAFYEAFLQANPVILEPLVSMEILVSAEDVGDITGHLSSSRAMVCGTEARRDGKVKVLAEAPLSTVDD YATRLKSMTSGEGEFTLSFARYEVVPPAVQQSLLRTIEDKDD >Mature_681_residues AEYQTARIRNFALLGHTGAGKSSLLEALLYGARVINQRGRVDKGTNHADFTAQEKAHQHSLEPSFLNLDFDEHHINLIDT PGLPDFFGRALLPLPAVESVLLVVNAATGIEPVTARAFEAARAQGKVVCICVNHIDGHLDKLPAIIEELQTTFGPRCLPV NLPSADGNDVVDCYLHCEDTRPTLFSQAASARDELVDTVLEEDEALMTLYLEQGEMLSAEQLHEPLETALRMGHLVPICF TSAELDIGIASLLEIMVKLMPSPLEANPPQFIKGFGDKAVPVDVTQSPDDHVLAQVFRVGIDPYFGRVAVFRLYQGTLEA GMRLFIGADRKPVKVAHLIKLQGAETTEVEKAIPGDICALCKIDELEVGSVLHDSHDEDEFHLRELKMPQPIFGLAVSPK RRGDEQKIAEVLAKLIAEDPSLAVSQNDAEGQTVLSGLGDLHLQIALEKAQSVFRVDMETCKPAVAYRETVCKAATARYR HKKQSGGAGQFGEVELTVEPLPRGQGFEFVSKVVGGAVPTQFIPAVEKGVREALKVGRLGGYPVEDVRVTVLDGKHHSVD SKEIAFVMAGKKAFYEAFLQANPVILEPLVSMEILVSAEDVGDITGHLSSSRAMVCGTEARRDGKVKVLAEAPLSTVDDY ATRLKSMTSGEGEFTLSFARYEVVPPAVQQSLLRTIEDKDD
Specific function: This Protein Promotes The GTP-Dependent Translocation Of The Nascent Protein Chain From The A-Site To The P-Site Of The Ribosome. [C]
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=694, Percent_Identity=27.3775216138329, Blast_Score=269, Evalue=5e-72, Organism=Homo sapiens, GI19923640, Length=722, Percent_Identity=24.0997229916898, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI25306287, Length=307, Percent_Identity=27.0358306188925, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI25306283, Length=443, Percent_Identity=22.3476297968397, Blast_Score=88, Evalue=2e-17, Organism=Escherichia coli, GI1789738, Length=699, Percent_Identity=29.8998569384835, Blast_Score=346, Evalue=3e-96, Organism=Escherichia coli, GI1790835, Length=501, Percent_Identity=24.3512974051896, Blast_Score=114, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17533571, Length=685, Percent_Identity=29.6350364963504, Blast_Score=298, Evalue=8e-81, Organism=Caenorhabditis elegans, GI17556745, Length=401, Percent_Identity=21.4463840399002, Blast_Score=85, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6323098, Length=706, Percent_Identity=28.4702549575071, Blast_Score=278, Evalue=2e-75, Organism=Saccharomyces cerevisiae, GI6322359, Length=788, Percent_Identity=23.4771573604061, Blast_Score=205, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6324707, Length=480, Percent_Identity=22.7083333333333, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6320593, Length=480, Percent_Identity=22.7083333333333, Blast_Score=76, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582462, Length=710, Percent_Identity=28.8732394366197, Blast_Score=294, Evalue=1e-79, Organism=Drosophila melanogaster, GI221458488, Length=710, Percent_Identity=24.2253521126761, Blast_Score=171, Evalue=1e-42,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 74242; Mature: 74110
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEYQTARIRNFALLGHTGAGKSSLLEALLYGARVINQRGRVDKGTNHADFTAQEKAHQH CCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH SLEPSFLNLDFDEHHINLIDTPGLPDFFGRALLPLPAVESVLLVVNAATGIEPVTARAFE CCCCCEEECCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHEEECCCCCCHHHHHHHH AARAQGKVVCICVNHIDGHLDKLPAIIEELQTTFGPRCLPVNLPSADGNDVVDCYLHCED HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEEECC TRPTLFSQAASARDELVDTVLEEDEALMTLYLEQGEMLSAEQLHEPLETALRMGHLVPIC CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEE FTSAELDIGIASLLEIMVKLMPSPLEANPPQFIKGFGDKAVPVDVTQSPDDHVLAQVFRV EECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHH GIDPYFGRVAVFRLYQGTLEAGMRLFIGADRKPVKVAHLIKLQGAETTEVEKAIPGDICA CCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCHHHHHCCCCCEEE LCKIDELEVGSVLHDSHDEDEFHLRELKMPQPIFGLAVSPKRRGDEQKIAEVLAKLIAED HEECCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCC PSLAVSQNDAEGQTVLSGLGDLHLQIALEKAQSVFRVDMETCKPAVAYRETVCKAATARY CCEEEECCCCCHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH RHKKQSGGAGQFGEVELTVEPLPRGQGFEFVSKVVGGAVPTQFIPAVEKGVREALKVGRL HHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC GGYPVEDVRVTVLDGKHHSVDSKEIAFVMAGKKAFYEAFLQANPVILEPLVSMEILVSAE CCCCCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHCCCEEEHHHHCEEEEEECH DVGDITGHLSSSRAMVCGTEARRDGKVKVLAEAPLSTVDDYATRLKSMTSGEGEFTLSFA HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEE RYEVVPPAVQQSLLRTIEDKDD EEECCCHHHHHHHHHHHCCCCC >Mature Secondary Structure AEYQTARIRNFALLGHTGAGKSSLLEALLYGARVINQRGRVDKGTNHADFTAQEKAHQH CCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH SLEPSFLNLDFDEHHINLIDTPGLPDFFGRALLPLPAVESVLLVVNAATGIEPVTARAFE CCCCCEEECCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHEEECCCCCCHHHHHHHH AARAQGKVVCICVNHIDGHLDKLPAIIEELQTTFGPRCLPVNLPSADGNDVVDCYLHCED HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEEEECC TRPTLFSQAASARDELVDTVLEEDEALMTLYLEQGEMLSAEQLHEPLETALRMGHLVPIC CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEE FTSAELDIGIASLLEIMVKLMPSPLEANPPQFIKGFGDKAVPVDVTQSPDDHVLAQVFRV EECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHH GIDPYFGRVAVFRLYQGTLEAGMRLFIGADRKPVKVAHLIKLQGAETTEVEKAIPGDICA CCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCHHHHHCCCCCEEE LCKIDELEVGSVLHDSHDEDEFHLRELKMPQPIFGLAVSPKRRGDEQKIAEVLAKLIAED HEECCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCC PSLAVSQNDAEGQTVLSGLGDLHLQIALEKAQSVFRVDMETCKPAVAYRETVCKAATARY CCEEEECCCCCHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH RHKKQSGGAGQFGEVELTVEPLPRGQGFEFVSKVVGGAVPTQFIPAVEKGVREALKVGRL HHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC GGYPVEDVRVTVLDGKHHSVDSKEIAFVMAGKKAFYEAFLQANPVILEPLVSMEILVSAE CCCCCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHCCCEEEHHHHCEEEEEECH DVGDITGHLSSSRAMVCGTEARRDGKVKVLAEAPLSTVDDYATRLKSMTSGEGEFTLSFA HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEE RYEVVPPAVQQSLLRTIEDKDD EEECCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]