Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774254

Identifier: 119774254

GI number: 119774254

Start: 1367949

End: 1368308

Strand: Direct

Name: 119774254

Synonym: Sama_1117

Alternate gene names: NA

Gene position: 1367949-1368308 (Clockwise)

Preceding gene: 119774248

Following gene: 119774255

Centisome position: 31.77

GC content: 48.06

Gene sequence:

>360_bases
ATGTTGCTATTGGCGTTCGCGTCGGTCCTTATTCGATGCAAAATTCACATTCTAGGGAGAGAGATTATGTTTTTACAAAA
ACGGAATGCATTTGTTGCAGGGCTTTTACTGGCAACTGCCACCTTGGTCGGCTGCGCCAGCTCAGACAGCAATCTGACTG
ACGAAGAACGCCAACTGGCAGAACAGCGCAAAGAAGCGCTGGGCAAGGCTGGATACAGATGCGATACCGTTAAAGTGACG
GGCTCCAATTTGCCATCCAAGCGTTGTACTACCCGTAAACAACGCGAACAAGAGAAAGACAATGCTCAATCTTATGTCGA
TGAAGTGATCCGCGGTACGGTTCCTGAAGAGACAAAATAG

Upstream 100 bases:

>100_bases
TACCTGAGGACGGGGAAAGATACAATCAGGCGGGACTCATTGTGAGGGCATAAGTCGAATTGTTTCTAATTGTTCCGCAT
GTTGAATTTGTGTTTTATGT

Downstream 100 bases:

>100_bases
TCCTTTAACTTCCCGCCCGGCTGGTTGGTCTTGTGACCTCAGTCAAATCCTGTGTTCATTCTCAGAACTATACTGCTTTT
GTAGCCAAGTAGAATGTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MLLLAFASVLIRCKIHILGREIMFLQKRNAFVAGLLLATATLVGCASSDSNLTDEERQLAEQRKEALGKAGYRCDTVKVT
GSNLPSKRCTTRKQREQEKDNAQSYVDEVIRGTVPEETK

Sequences:

>Translated_119_residues
MLLLAFASVLIRCKIHILGREIMFLQKRNAFVAGLLLATATLVGCASSDSNLTDEERQLAEQRKEALGKAGYRCDTVKVT
GSNLPSKRCTTRKQREQEKDNAQSYVDEVIRGTVPEETK
>Mature_119_residues
MLLLAFASVLIRCKIHILGREIMFLQKRNAFVAGLLLATATLVGCASSDSNLTDEERQLAEQRKEALGKAGYRCDTVKVT
GSNLPSKRCTTRKQREQEKDNAQSYVDEVIRGTVPEETK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13243; Mature: 13243

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLAFASVLIRCKIHILGREIMFLQKRNAFVAGLLLATATLVGCASSDSNLTDEERQLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
EQRKEALGKAGYRCDTVKVTGSNLPSKRCTTRKQREQEKDNAQSYVDEVIRGTVPEETK
HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLLLAFASVLIRCKIHILGREIMFLQKRNAFVAGLLLATATLVGCASSDSNLTDEERQLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
EQRKEALGKAGYRCDTVKVTGSNLPSKRCTTRKQREQEKDNAQSYVDEVIRGTVPEETK
HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA