| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774245
Identifier: 119774245
GI number: 119774245
Start: 1342969
End: 1344999
Strand: Reverse
Name: 119774245
Synonym: Sama_1108
Alternate gene names: NA
Gene position: 1344999-1342969 (Counterclockwise)
Preceding gene: 119774247
Following gene: 119774243
Centisome position: 31.23
GC content: 57.61
Gene sequence:
>2031_bases ATGCGCTATTCACTGCTGCTGTTGGCCATGGCCGCCAGCCTGCCATTGCAGGCCAAAACCTTAAGCCTCAAGTCCCCCAA TGGCGAGATTGAACTTAGGGTAAGCGATGATGACGCCCCCCACTACGCCGTGCTGTTTCATGGTAAGCCTGTGATTGGCG CCTCCAAACTGGGGTTTGATTTCACCAATGCCGCCAACTTTCGCGGCGGTTTTGATATCACAGACAGCCAAAGGGCCACG GTGGACAGCAGCTGGGAGCAGCCCTGGGGCGAGGCGCGCATCATTGAAGATAAGCACAACGAGCTTGTGGTGAGCTTTAC TCACCCAGACAGCAAACAAGCCTACAAGGTGCGCTTTCGCGCCTTTGACGATGGCGTGGGCTTTCGCTACGAGGTCAATG CCAATACGCCCCTGAACATAGGCCGCGAGCTCACCGAGTTTGCCATTGAGGATGCCGACAAGGCCGAGGCCTGGTGGATC CCGGGCCGTGGCTGGAACCGCTACGAGTATCTCTATCAGCACAGCAAGCTTGCCGATGCCGCCCTGGTGCAAACGCCTTT TACCTTAAAAAACAAGGATGGGGTGCATATTGCCATCCACGAGGCGGCCCTGGTGGACTACGCCGCCATGACCCTGAATC AGCGCCGACCCGGCACCTTTGTTGCCGAGCTCACCCCCTGGTCAGATGGGGTGGCGGTTAAAACCAATGGCACCTTCAAC ACCCCCTGGCGCACGCTGCACATTGCGCCCAATGCCACCGGACTGATTAACTCGCACCTTATACTTAATCTTAACGAGCC CAATCAGCTTGGGGATGTGTCCTGGGTCGAGCCCGGCAAGTACGTGGGTATTTGGTGGGGCATGCACATCAATAAAAACA CCTGGGGCAGCGGCAGCCAGCATGGCGCCACCACAGCTGAGACCAAAAAGTACCTGCGCTTTGCCGCCGACAATGGCTTT GATGGGGTGCTGGTGGAAGGCTGGAATATCGGCTGGGACGGCGACTGGTTCCACAATGGCGATTTGTTCAGCTTTACCAA GCCCTTTGCCGATTTTGATATCAAGGCCATTGCCGATTATGGCCGCGAAGTGGGCGCCAGGCTGATTGGCCACCACGAAA CCTCCGGCAGCGTCAGCAACTACCGCAAACAGTGGGACGGCGCCTTCAGTCTGTACCAAAAGATGGGCGTTGCCCAAGTA AAAACCGGCTATGTGGCCGATGGCGGCAACATCAAACGCATCGATGAAAACGGCCTTGAGCGCTTTGAGTGGCACGATGG CCAGTTTATGGTGGGCGAGTATCTGGATAACGTGAAAACCGCCGCCAAATACCAGATAAGCATCAACACCCACGAGCCCA TCAAGGACACAGGACTGCGCCGCACCTACCCCAACTGGCTGGCCCGCGAGGGTGCCCGTGGGCAGGAATACAATGCCTGG GGCAATCCGCCCAACCCGCCGGAGCACATCGCCATGCTGTCGTTCACCCGCATGCTGGCAGGCCCCATGGACTTTACTCC GGGTATCTTCGACATGAGCTTTAATGGCCTTGGCGACAACACAAACCGCCCCCAAAGCACCCTCGCCAAGCAGCTGGCCC TGTATGTGGTGCTCTACAGCCCCATCCAGATGGCGGCCGATTTGCCCGAGAACTACTTAAAACGCCCGGACGCCTTTCAA TTTATCAAAGACGTACCCACAGACTGGGAGCAGAGTATTGCCCTCGATGGCGCGGTGGGCGACTTTGTGGTGATGGCCCG TAAAGAGCGCAAAGCCCGCCAATACAGCGGCAACGACTGGTATCTGGGCGCCGTGACCGACGAAAATGCCCGGGATGTGA CGGTGAAGCTGGATTTCCTCGAGCCCGGCAAAACCTTTGAGGCGCAGATTTATCAGGACGGCAAAGACGCCGAGTGGAAA TGGCGCCCCTATGAGATGGATATCAAAAAGCAAACCGTACGCAAGGGCGATACCCTCAGCCTGCATCTGGCCGAAGGTGG CGGCGCCGCTGTACGCCTGAAAGCACTCTAA
Upstream 100 bases:
>100_bases ACGTCTGCCGGGCTGAATACGTATGCAGCTTATGTCCCCCGGCGCACACCTTCGCTAAGGTGGTCACAAATAAAAAATGA CACCTTACAAGGAATGATAA
Downstream 100 bases:
>100_bases GGCCAAAGGCAGCCGCCCAGATCAGTCATCCGGGCATAACCCTTTCACTACCTCACCTTTGACTAACTGGCTTTTGACTA ACCGGCTTTTGCCAACAAAA
Product: alpha-glucosidase
Products: NA
Alternate protein names: Glycoside Hydrolase; Glycoside Hydrolase Family; Alpha-Glucosidase Family Protein; Alpha-Glucosidase Protein; Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; Esterase; Alpha-Glucosidase SusB; Alpha-Glucosidase-Like Protein; Secreted Protein
Number of amino acids: Translated: 676; Mature: 676
Protein sequence:
>676_residues MRYSLLLLAMAASLPLQAKTLSLKSPNGEIELRVSDDDAPHYAVLFHGKPVIGASKLGFDFTNAANFRGGFDITDSQRAT VDSSWEQPWGEARIIEDKHNELVVSFTHPDSKQAYKVRFRAFDDGVGFRYEVNANTPLNIGRELTEFAIEDADKAEAWWI PGRGWNRYEYLYQHSKLADAALVQTPFTLKNKDGVHIAIHEAALVDYAAMTLNQRRPGTFVAELTPWSDGVAVKTNGTFN TPWRTLHIAPNATGLINSHLILNLNEPNQLGDVSWVEPGKYVGIWWGMHINKNTWGSGSQHGATTAETKKYLRFAADNGF DGVLVEGWNIGWDGDWFHNGDLFSFTKPFADFDIKAIADYGREVGARLIGHHETSGSVSNYRKQWDGAFSLYQKMGVAQV KTGYVADGGNIKRIDENGLERFEWHDGQFMVGEYLDNVKTAAKYQISINTHEPIKDTGLRRTYPNWLAREGARGQEYNAW GNPPNPPEHIAMLSFTRMLAGPMDFTPGIFDMSFNGLGDNTNRPQSTLAKQLALYVVLYSPIQMAADLPENYLKRPDAFQ FIKDVPTDWEQSIALDGAVGDFVVMARKERKARQYSGNDWYLGAVTDENARDVTVKLDFLEPGKTFEAQIYQDGKDAEWK WRPYEMDIKKQTVRKGDTLSLHLAEGGGAAVRLKAL
Sequences:
>Translated_676_residues MRYSLLLLAMAASLPLQAKTLSLKSPNGEIELRVSDDDAPHYAVLFHGKPVIGASKLGFDFTNAANFRGGFDITDSQRAT VDSSWEQPWGEARIIEDKHNELVVSFTHPDSKQAYKVRFRAFDDGVGFRYEVNANTPLNIGRELTEFAIEDADKAEAWWI PGRGWNRYEYLYQHSKLADAALVQTPFTLKNKDGVHIAIHEAALVDYAAMTLNQRRPGTFVAELTPWSDGVAVKTNGTFN TPWRTLHIAPNATGLINSHLILNLNEPNQLGDVSWVEPGKYVGIWWGMHINKNTWGSGSQHGATTAETKKYLRFAADNGF DGVLVEGWNIGWDGDWFHNGDLFSFTKPFADFDIKAIADYGREVGARLIGHHETSGSVSNYRKQWDGAFSLYQKMGVAQV KTGYVADGGNIKRIDENGLERFEWHDGQFMVGEYLDNVKTAAKYQISINTHEPIKDTGLRRTYPNWLAREGARGQEYNAW GNPPNPPEHIAMLSFTRMLAGPMDFTPGIFDMSFNGLGDNTNRPQSTLAKQLALYVVLYSPIQMAADLPENYLKRPDAFQ FIKDVPTDWEQSIALDGAVGDFVVMARKERKARQYSGNDWYLGAVTDENARDVTVKLDFLEPGKTFEAQIYQDGKDAEWK WRPYEMDIKKQTVRKGDTLSLHLAEGGGAAVRLKAL >Mature_676_residues MRYSLLLLAMAASLPLQAKTLSLKSPNGEIELRVSDDDAPHYAVLFHGKPVIGASKLGFDFTNAANFRGGFDITDSQRAT VDSSWEQPWGEARIIEDKHNELVVSFTHPDSKQAYKVRFRAFDDGVGFRYEVNANTPLNIGRELTEFAIEDADKAEAWWI PGRGWNRYEYLYQHSKLADAALVQTPFTLKNKDGVHIAIHEAALVDYAAMTLNQRRPGTFVAELTPWSDGVAVKTNGTFN TPWRTLHIAPNATGLINSHLILNLNEPNQLGDVSWVEPGKYVGIWWGMHINKNTWGSGSQHGATTAETKKYLRFAADNGF DGVLVEGWNIGWDGDWFHNGDLFSFTKPFADFDIKAIADYGREVGARLIGHHETSGSVSNYRKQWDGAFSLYQKMGVAQV KTGYVADGGNIKRIDENGLERFEWHDGQFMVGEYLDNVKTAAKYQISINTHEPIKDTGLRRTYPNWLAREGARGQEYNAW GNPPNPPEHIAMLSFTRMLAGPMDFTPGIFDMSFNGLGDNTNRPQSTLAKQLALYVVLYSPIQMAADLPENYLKRPDAFQ FIKDVPTDWEQSIALDGAVGDFVVMARKERKARQYSGNDWYLGAVTDENARDVTVKLDFLEPGKTFEAQIYQDGKDAEWK WRPYEMDIKKQTVRKGDTLSLHLAEGGGAAVRLKAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75867; Mature: 75867
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYSLLLLAMAASLPLQAKTLSLKSPNGEIELRVSDDDAPHYAVLFHGKPVIGASKLGFD CCHHHEEHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCEECCHHCCCC FTNAANFRGGFDITDSQRATVDSSWEQPWGEARIIEDKHNELVVSFTHPDSKQAYKVRFR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEE AFDDGVGFRYEVNANTPLNIGRELTEFAIEDADKAEAWWIPGRGWNRYEYLYQHSKLADA EEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH ALVQTPFTLKNKDGVHIAIHEAALVDYAAMTLNQRRPGTFVAELTPWSDGVAVKTNGTFN HHHCCCCEECCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCC TPWRTLHIAPNATGLINSHLILNLNEPNQLGDVSWVEPGKYVGIWWGMHINKNTWGSGSQ CCEEEEEECCCCCCEECCEEEEEECCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCC HGATTAETKKYLRFAADNGFDGVLVEGWNIGWDGDWFHNGDLFSFTKPFADFDIKAIADY CCCCHHHHHHHHEEECCCCCCEEEEECEECCCCCCEEECCCCCEECCCCCCCCHHHHHHH GREVGARLIGHHETSGSVSNYRKQWDGAFSLYQKMGVAQVKTGYVADGGNIKRIDENGLE HHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHCCCEEEECCEEECCCCEEEECCCCCC RFEWHDGQFMVGEYLDNVKTAAKYQISINTHEPIKDTGLRRTYPNWLAREGARGQEYNAW EEEECCCCEEHHHHHCCHHCEEEEEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCCCC GNPPNPPEHIAMLSFTRMLAGPMDFTPGIFDMSFNGLGDNTNRPQSTLAKQLALYVVLYS CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEECC PIQMAADLPENYLKRPDAFQFIKDVPTDWEQSIALDGAVGDFVVMARKERKARQYSGNDW HHHHHHCCCHHHHCCCCHHHHHHHCCCCHHHHEEECCCCCCEEEEEHHHHHHHHCCCCCE YLGAVTDENARDVTVKLDFLEPGKTFEAQIYQDGKDAEWKWRPYEMDIKKQTVRKGDTLS EEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCCEEECCEECCHHHHHHCCCCEEE LHLAEGGGAAVRLKAL EEEECCCCEEEEEEEC >Mature Secondary Structure MRYSLLLLAMAASLPLQAKTLSLKSPNGEIELRVSDDDAPHYAVLFHGKPVIGASKLGFD CCHHHEEHHHHHCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEEECCCEECCHHCCCC FTNAANFRGGFDITDSQRATVDSSWEQPWGEARIIEDKHNELVVSFTHPDSKQAYKVRFR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEE AFDDGVGFRYEVNANTPLNIGRELTEFAIEDADKAEAWWIPGRGWNRYEYLYQHSKLADA EEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH ALVQTPFTLKNKDGVHIAIHEAALVDYAAMTLNQRRPGTFVAELTPWSDGVAVKTNGTFN HHHCCCCEECCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCCCC TPWRTLHIAPNATGLINSHLILNLNEPNQLGDVSWVEPGKYVGIWWGMHINKNTWGSGSQ CCEEEEEECCCCCCEECCEEEEEECCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCC HGATTAETKKYLRFAADNGFDGVLVEGWNIGWDGDWFHNGDLFSFTKPFADFDIKAIADY CCCCHHHHHHHHEEECCCCCCEEEEECEECCCCCCEEECCCCCEECCCCCCCCHHHHHHH GREVGARLIGHHETSGSVSNYRKQWDGAFSLYQKMGVAQVKTGYVADGGNIKRIDENGLE HHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHCCCEEEECCEEECCCCEEEECCCCCC RFEWHDGQFMVGEYLDNVKTAAKYQISINTHEPIKDTGLRRTYPNWLAREGARGQEYNAW EEEECCCCEEHHHHHCCHHCEEEEEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCCCC GNPPNPPEHIAMLSFTRMLAGPMDFTPGIFDMSFNGLGDNTNRPQSTLAKQLALYVVLYS CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEECC PIQMAADLPENYLKRPDAFQFIKDVPTDWEQSIALDGAVGDFVVMARKERKARQYSGNDW HHHHHHCCCHHHHCCCCHHHHHHHCCCCHHHHEEECCCCCCEEEEEHHHHHHHHCCCCCE YLGAVTDENARDVTVKLDFLEPGKTFEAQIYQDGKDAEWKWRPYEMDIKKQTVRKGDTLS EEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCCEEECCEECCHHHHHHCCCCEEE LHLAEGGGAAVRLKAL EEEECCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA