| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is baeS [H]
Identifier: 119774240
GI number: 119774240
Start: 1335418
End: 1336854
Strand: Reverse
Name: baeS [H]
Synonym: Sama_1103
Alternate gene names: 119774240
Gene position: 1336854-1335418 (Counterclockwise)
Preceding gene: 119774241
Following gene: 119774239
Centisome position: 31.05
GC content: 56.99
Gene sequence:
>1437_bases ATGTTCCAATTTTTACGCGATATCCGGTTATTCAGTGATACCGAATCCTTAAATGGCATCGCCCTGAAACGTCGGCAACT GGTGCTCAATGGCCTGCTGCTGACCATCATTTTGCTACTCAGTGTTTTTGCGATTTACAACCAATTCAGGGGCATGTGGC AGATTGCCGCGCTGGATTTATGCGCCCTGGCGGCCTGCCTGTTTGCCTATATTCGCCTGCGCCTGAGTCATCGTTTACCC CGCCAGACTCCCCATGGGGATAATACCCAGAATGGCCACAGGCCGGATGATCCCCAAGTCGCGCAGGATACTGATGCCCT GGCCCATAACAAACAGCGCAATGGGGCACAACTCAACATCCTCAATTCCACCTCCCTGCTGGTCAGCCTCATTCTAATGC TGTTTTTATGGGCGCTGGCCTGGCAGGGACAAGCGGAAAACTTCAGCCTTATCTGGACCTTCTTCCTGCCGGTATTTGTG TTCATGCTCAATGGCCGCGCCCTGGGTGCATCTCTGGTGGCGGTGTTTTATCTGGTGCTGTTTACCATGGCATTCAGCCA ACTAGGGCAATGGCAGGCGGGCGCCTGGGACCAGGTCAGCCTGATCCGGTTTGTGCTGGCCTCCCTGGTGATGGTCTTCA CCTGTTATTTCAGCGAGCTGACCCTGAACCAGGCCCACCTTGAGCTGAAAAAATCCCACGCCGAGTCTGAAAGGCTGCTG CAGGATCGCAATGCCCTGATGCTCGACACTCTGGTCAAACAGCAGAAGCTGCTTACGGATGTATCCCATGAACTGCGAAC CCCACTCAGTGTGCTGAGAATGAAACTGGAGGCCATGCAGGATGGGGTCATGGCACCAAGCAGTGCCAATATCGAGGGGC TGCTCAAGCACATGCAGCAACTGGATGCCTTCATTTCGGACCTGTCCCGCGCCAGCAAGCTCGACCAAACCCGGCTCGAC GGTAATGCGGTTCGGGTGGAATTACATGATTTCCTGTCCGATTGGATAAACCGTTTTCAGGACAGTGTCGCTGGCCGGGG CTTACAGCTCACCCTGGATCTTACCCGCAGCCATCCCCCCTGCCCCGCCCTCCTGGACGAAACCAGTTTCGAGCTGGCGC TCGGCAAGTTGATGGAAAACAGCCTGCGTTATACCCAAGCGCCGGGCAGTATTCGACTCAGCCTTTGTCGCCGTGGTGAT GTCATAGTCATCACCCTGGAGGACAGTGCTCCCGGCGTGGCAGCAGACCAGCTTGAGCGCCTGTTTGAGCCCCTGTACCG GTTGGAGGATTCCCGCAGCCGTGACACGGGTGGCGCGGGTCTGGGCTTATCCGTGGCCAAGTCCATCATCCTGGCGCACC AGGGGCAAATCCATGCCAGCCTGTCTCCTCTGGGTGGCCTGCGGATGGTGATCACCCTGCCGGCACTGGCGGACTGA
Upstream 100 bases:
>100_bases TCCTGTGGTCTTATTTGGCGTAACGGCAAGGTCTCAGCGCGTAAAGCAGCATGAGTAGCCAAAGTGCCGCAACGCGAAAG CTGTAGAGTCAGGGGTAAAC
Downstream 100 bases:
>100_bases GCCTGATTCGCCACGGGTTCGCCAAGAGTGCGCCACTGGTTCGTAAAGAGTTCGGCACTGATTCGCCAAAAGCTCGCCAA ATTTATACATTCGCCACCAT
Product: signal transduction histidine kinase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MFQFLRDIRLFSDTESLNGIALKRRQLVLNGLLLTIILLLSVFAIYNQFRGMWQIAALDLCALAACLFAYIRLRLSHRLP RQTPHGDNTQNGHRPDDPQVAQDTDALAHNKQRNGAQLNILNSTSLLVSLILMLFLWALAWQGQAENFSLIWTFFLPVFV FMLNGRALGASLVAVFYLVLFTMAFSQLGQWQAGAWDQVSLIRFVLASLVMVFTCYFSELTLNQAHLELKKSHAESERLL QDRNALMLDTLVKQQKLLTDVSHELRTPLSVLRMKLEAMQDGVMAPSSANIEGLLKHMQQLDAFISDLSRASKLDQTRLD GNAVRVELHDFLSDWINRFQDSVAGRGLQLTLDLTRSHPPCPALLDETSFELALGKLMENSLRYTQAPGSIRLSLCRRGD VIVITLEDSAPGVAADQLERLFEPLYRLEDSRSRDTGGAGLGLSVAKSIILAHQGQIHASLSPLGGLRMVITLPALAD
Sequences:
>Translated_478_residues MFQFLRDIRLFSDTESLNGIALKRRQLVLNGLLLTIILLLSVFAIYNQFRGMWQIAALDLCALAACLFAYIRLRLSHRLP RQTPHGDNTQNGHRPDDPQVAQDTDALAHNKQRNGAQLNILNSTSLLVSLILMLFLWALAWQGQAENFSLIWTFFLPVFV FMLNGRALGASLVAVFYLVLFTMAFSQLGQWQAGAWDQVSLIRFVLASLVMVFTCYFSELTLNQAHLELKKSHAESERLL QDRNALMLDTLVKQQKLLTDVSHELRTPLSVLRMKLEAMQDGVMAPSSANIEGLLKHMQQLDAFISDLSRASKLDQTRLD GNAVRVELHDFLSDWINRFQDSVAGRGLQLTLDLTRSHPPCPALLDETSFELALGKLMENSLRYTQAPGSIRLSLCRRGD VIVITLEDSAPGVAADQLERLFEPLYRLEDSRSRDTGGAGLGLSVAKSIILAHQGQIHASLSPLGGLRMVITLPALAD >Mature_478_residues MFQFLRDIRLFSDTESLNGIALKRRQLVLNGLLLTIILLLSVFAIYNQFRGMWQIAALDLCALAACLFAYIRLRLSHRLP RQTPHGDNTQNGHRPDDPQVAQDTDALAHNKQRNGAQLNILNSTSLLVSLILMLFLWALAWQGQAENFSLIWTFFLPVFV FMLNGRALGASLVAVFYLVLFTMAFSQLGQWQAGAWDQVSLIRFVLASLVMVFTCYFSELTLNQAHLELKKSHAESERLL QDRNALMLDTLVKQQKLLTDVSHELRTPLSVLRMKLEAMQDGVMAPSSANIEGLLKHMQQLDAFISDLSRASKLDQTRLD GNAVRVELHDFLSDWINRFQDSVAGRGLQLTLDLTRSHPPCPALLDETSFELALGKLMENSLRYTQAPGSIRLSLCRRGD VIVITLEDSAPGVAADQLERLFEPLYRLEDSRSRDTGGAGLGLSVAKSIILAHQGQIHASLSPLGGLRMVITLPALAD
Specific function: Member of the two-component regulatory system BaeS/BaeR. May activate BaeR by phosphorylation [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788393, Length=247, Percent_Identity=39.6761133603239, Blast_Score=157, Evalue=1e-39, Organism=Escherichia coli, GI1790346, Length=226, Percent_Identity=35.8407079646018, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1787894, Length=228, Percent_Identity=34.2105263157895, Blast_Score=113, Evalue=3e-26, Organism=Escherichia coli, GI1786783, Length=232, Percent_Identity=29.3103448275862, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1786600, Length=262, Percent_Identity=25.1908396946565, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789808, Length=224, Percent_Identity=28.125, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787374, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786912, Length=225, Percent_Identity=25.7777777777778, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1790551, Length=219, Percent_Identity=30.1369863013699, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI145693157, Length=224, Percent_Identity=25, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI87081816, Length=280, Percent_Identity=23.5714285714286, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53358; Mature: 53358
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS00095 C5_MTASE_2 ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQFLRDIRLFSDTESLNGIALKRRQLVLNGLLLTIILLLSVFAIYNQFRGMWQIAALDL CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CALAACLFAYIRLRLSHRLPRQTPHGDNTQNGHRPDDPQVAQDTDALAHNKQRNGAQLNI HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE LNSTSLLVSLILMLFLWALAWQGQAENFSLIWTFFLPVFVFMLNGRALGASLVAVFYLVL ECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FTMAFSQLGQWQAGAWDQVSLIRFVLASLVMVFTCYFSELTLNQAHLELKKSHAESERLL HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDRNALMLDTLVKQQKLLTDVSHELRTPLSVLRMKLEAMQDGVMAPSSANIEGLLKHMQQ HHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LDAFISDLSRASKLDQTRLDGNAVRVELHDFLSDWINRFQDSVAGRGLQLTLDLTRSHPP HHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC CPALLDETSFELALGKLMENSLRYTQAPGSIRLSLCRRGDVIVITLEDSAPGVAADQLER CCHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH LFEPLYRLEDSRSRDTGGAGLGLSVAKSIILAHQGQIHASLSPLGGLRMVITLPALAD HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCEEEEEECCCCCC >Mature Secondary Structure MFQFLRDIRLFSDTESLNGIALKRRQLVLNGLLLTIILLLSVFAIYNQFRGMWQIAALDL CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CALAACLFAYIRLRLSHRLPRQTPHGDNTQNGHRPDDPQVAQDTDALAHNKQRNGAQLNI HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE LNSTSLLVSLILMLFLWALAWQGQAENFSLIWTFFLPVFVFMLNGRALGASLVAVFYLVL ECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FTMAFSQLGQWQAGAWDQVSLIRFVLASLVMVFTCYFSELTLNQAHLELKKSHAESERLL HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDRNALMLDTLVKQQKLLTDVSHELRTPLSVLRMKLEAMQDGVMAPSSANIEGLLKHMQQ HHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LDAFISDLSRASKLDQTRLDGNAVRVELHDFLSDWINRFQDSVAGRGLQLTLDLTRSHPP HHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC CPALLDETSFELALGKLMENSLRYTQAPGSIRLSLCRRGDVIVITLEDSAPGVAADQLER CCHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHH LFEPLYRLEDSRSRDTGGAGLGLSVAKSIILAHQGQIHASLSPLGGLRMVITLPALAD HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8282725; 9097040; 9278503 [H]