| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774233
Identifier: 119774233
GI number: 119774233
Start: 1321785
End: 1322393
Strand: Direct
Name: 119774233
Synonym: Sama_1096
Alternate gene names: NA
Gene position: 1321785-1322393 (Clockwise)
Preceding gene: 119774231
Following gene: 119774235
Centisome position: 30.7
GC content: 56.98
Gene sequence:
>609_bases ATGAGACTTGTCTTAAGTGTGCTGCTCACGGCAGTCCTCTCCATCGCCCTGCTGGGCTGTCAGAGTACAGAGCCGCCAAA GGAAATTAGCCTGGCCCAGGCCGACCCCGTGATGTTACAGCTTTTTTCCATTAAAACCCTGGCGGGGTTTACGCTGCGGG TACCCCAGAGCGAAGCTGTTGCCCGGTTATCTACCTTTGTCGAAACGCCTCGTCCCTGGGTAAGCGGTGATTACAGCGAC GGCCCGGTGCGGGGGCAGGTATTATTGGGTTACCGGGATTTGCAAATGACCAATGCCAGGCTGGCGGGATCACAGCTGAT GGTGGCGCCCTTTGTGGTTACCAATCAGGGCTCAGGCAGTTTCTGGTATCTGGGATTATTTGGTCTCAAGGCCGAGAGTG GCACTGCCACCCACCTGAGTTCGGTGTTCCTGGGTGACAGAATCGAGCTTCGGGGGATAAGCGTGGCTGCCAGCCAGTTT TTGCCCCTGACAGTGACCACAGAGCTCCTGATCCGGGATGCCAATCAGGCCATGGCCGAGACACCCGGTTTATTGGAACT GCGCCGGTTTGAGATAAACCCTCAGGGGCAACTGTTGGCGCTTGACTGA
Upstream 100 bases:
>100_bases GCATTTGACAAAAACCGGGCGGCGGATAGGTATTCGATGGGCGCTCATGCTATGGTAGCTAATAATCTCAATCACTTGCA CAACCTATTGGAGATAGGCA
Downstream 100 bases:
>100_bases GGTTACTCTACCTCAAGCTCAATGTCGGTACAGCCCTTGGGGCAGCGGATATGACCGAGCAGATGGGTTTCACCGGCAGC CGGTAGGCTGGCAGCCAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAVARLSTFVETPRPWVSGDYSD GPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGSFWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQF LPLTVTTELLIRDANQAMAETPGLLELRRFEINPQGQLLALD
Sequences:
>Translated_202_residues MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAVARLSTFVETPRPWVSGDYSD GPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGSFWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQF LPLTVTTELLIRDANQAMAETPGLLELRRFEINPQGQLLALD >Mature_202_residues MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAVARLSTFVETPRPWVSGDYSD GPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGSFWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQF LPLTVTTELLIRDANQAMAETPGLLELRRFEINPQGQLLALD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21833; Mature: 21833
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAV CHHHHHHHHHHHHHHHHHCCCCCCCHHHCEECCCCHHHHHEEHHHHHCCEEEECCCHHHH ARLSTFVETPRPWVSGDYSDGPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGS HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCEECCCEEEEEEEEEEECCCCC FWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQFLPLTVTTELLIRDANQAMAE EEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEHHCCEEEEEEEHHHHHCCCCHHHHC TPGLLELRRFEINPQGQLLALD CCCCEEEEEEEECCCCCEEEEC >Mature Secondary Structure MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAV CHHHHHHHHHHHHHHHHHCCCCCCCHHHCEECCCCHHHHHEEHHHHHCCEEEECCCHHHH ARLSTFVETPRPWVSGDYSDGPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGS HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCEECCCEEEEEEEEEEECCCCC FWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQFLPLTVTTELLIRDANQAMAE EEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEHHCCEEEEEEEHHHHHCCCCHHHHC TPGLLELRRFEINPQGQLLALD CCCCEEEEEEEECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA