Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774233

Identifier: 119774233

GI number: 119774233

Start: 1321785

End: 1322393

Strand: Direct

Name: 119774233

Synonym: Sama_1096

Alternate gene names: NA

Gene position: 1321785-1322393 (Clockwise)

Preceding gene: 119774231

Following gene: 119774235

Centisome position: 30.7

GC content: 56.98

Gene sequence:

>609_bases
ATGAGACTTGTCTTAAGTGTGCTGCTCACGGCAGTCCTCTCCATCGCCCTGCTGGGCTGTCAGAGTACAGAGCCGCCAAA
GGAAATTAGCCTGGCCCAGGCCGACCCCGTGATGTTACAGCTTTTTTCCATTAAAACCCTGGCGGGGTTTACGCTGCGGG
TACCCCAGAGCGAAGCTGTTGCCCGGTTATCTACCTTTGTCGAAACGCCTCGTCCCTGGGTAAGCGGTGATTACAGCGAC
GGCCCGGTGCGGGGGCAGGTATTATTGGGTTACCGGGATTTGCAAATGACCAATGCCAGGCTGGCGGGATCACAGCTGAT
GGTGGCGCCCTTTGTGGTTACCAATCAGGGCTCAGGCAGTTTCTGGTATCTGGGATTATTTGGTCTCAAGGCCGAGAGTG
GCACTGCCACCCACCTGAGTTCGGTGTTCCTGGGTGACAGAATCGAGCTTCGGGGGATAAGCGTGGCTGCCAGCCAGTTT
TTGCCCCTGACAGTGACCACAGAGCTCCTGATCCGGGATGCCAATCAGGCCATGGCCGAGACACCCGGTTTATTGGAACT
GCGCCGGTTTGAGATAAACCCTCAGGGGCAACTGTTGGCGCTTGACTGA

Upstream 100 bases:

>100_bases
GCATTTGACAAAAACCGGGCGGCGGATAGGTATTCGATGGGCGCTCATGCTATGGTAGCTAATAATCTCAATCACTTGCA
CAACCTATTGGAGATAGGCA

Downstream 100 bases:

>100_bases
GGTTACTCTACCTCAAGCTCAATGTCGGTACAGCCCTTGGGGCAGCGGATATGACCGAGCAGATGGGTTTCACCGGCAGC
CGGTAGGCTGGCAGCCAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAVARLSTFVETPRPWVSGDYSD
GPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGSFWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQF
LPLTVTTELLIRDANQAMAETPGLLELRRFEINPQGQLLALD

Sequences:

>Translated_202_residues
MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAVARLSTFVETPRPWVSGDYSD
GPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGSFWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQF
LPLTVTTELLIRDANQAMAETPGLLELRRFEINPQGQLLALD
>Mature_202_residues
MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAVARLSTFVETPRPWVSGDYSD
GPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGSFWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQF
LPLTVTTELLIRDANQAMAETPGLLELRRFEINPQGQLLALD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21833; Mature: 21833

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAV
CHHHHHHHHHHHHHHHHHCCCCCCCHHHCEECCCCHHHHHEEHHHHHCCEEEECCCHHHH
ARLSTFVETPRPWVSGDYSDGPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGS
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCEECCCEEEEEEEEEEECCCCC
FWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQFLPLTVTTELLIRDANQAMAE
EEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEHHCCEEEEEEEHHHHHCCCCHHHHC
TPGLLELRRFEINPQGQLLALD
CCCCEEEEEEEECCCCCEEEEC
>Mature Secondary Structure
MRLVLSVLLTAVLSIALLGCQSTEPPKEISLAQADPVMLQLFSIKTLAGFTLRVPQSEAV
CHHHHHHHHHHHHHHHHHCCCCCCCHHHCEECCCCHHHHHEEHHHHHCCEEEECCCHHHH
ARLSTFVETPRPWVSGDYSDGPVRGQVLLGYRDLQMTNARLAGSQLMVAPFVVTNQGSGS
HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEECCCEECCCEEEEEEEEEEECCCCC
FWYLGLFGLKAESGTATHLSSVFLGDRIELRGISVAASQFLPLTVTTELLIRDANQAMAE
EEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEEHHCCEEEEEEEHHHHHCCCCHHHHC
TPGLLELRRFEINPQGQLLALD
CCCCEEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA