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The map label for this gene is yezE [H]

Identifier: 119774226

GI number: 119774226

Start: 1316410

End: 1316982

Strand: Direct

Name: yezE [H]

Synonym: Sama_1089

Alternate gene names: 119774226

Gene position: 1316410-1316982 (Clockwise)

Preceding gene: 119774221

Following gene: 119774228

Centisome position: 30.57

GC content: 56.37

Gene sequence:

>573_bases
ATGGCGCGAAGTTGTAATTTTTGCAAAGAGGAAAAGCTGGAACAGGCCATGAACCTGTTTTGGCAAAAAGGCTACGAGGG
CACCTCGGTGGCCGATCTGGTGGAGCATCTGGGGATTAATCGTTTCAGCCTGTACAACAGTTTTGGCGATAAGCTGACGT
TGTACCGTGATGCGCTGCGCCGTTACCTCTACACCCGCGGCCTGACCGGACTTGGGCCACTGCAAGCCGACGATGCCGAC
ATGGACGCGCTGATGAATTTGGTGGAAGAATTTGCCGCCAAGCAAAAAGATCAACAGTTTGGATGTTTTATGCAAAACGC
CCTGCTGGAGCGCTGTGTGGAGGATGAAGAGGTGAAGCGTCTTGGCAATGAGCTGTTTGAGGGGCTGGAGCAGGCGTTTG
CCAAGGTGCTCGCCCGCTACCAGACCAGGGAGCGCGCCGCCGAGCTGGCGGCCTTTCTGGTGATGCAATTGCAGGGCATC
CGGGTGCTGGGCAAGTCCGGACAGTTTGCACTGCTCGATGCGGCCATGGTGGTGCTCAGAGGCGAAATCCAGCGCTGGAA
AAGCCCCATTTGA

Upstream 100 bases:

>100_bases
TCTGAACGATCGGTTAGGATAGAATCTACTGCATAACTGAACGAACGGTCAATAATTAGATCGAGAGTTAATATTCACTT
TTGCGACGAGATATTCCCCA

Downstream 100 bases:

>100_bases
CACACCTTTGTCTGCGCCCTCAGTAATCCAGCTCCAGTGCAAAACACAAATAGCGCATCAGCTGTTGGCAGTGCTCAAAC
TCCGCGACGAGCCTTGATGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MARSCNFCKEEKLEQAMNLFWQKGYEGTSVADLVEHLGINRFSLYNSFGDKLTLYRDALRRYLYTRGLTGLGPLQADDAD
MDALMNLVEEFAAKQKDQQFGCFMQNALLERCVEDEEVKRLGNELFEGLEQAFAKVLARYQTRERAAELAAFLVMQLQGI
RVLGKSGQFALLDAAMVVLRGEIQRWKSPI

Sequences:

>Translated_190_residues
MARSCNFCKEEKLEQAMNLFWQKGYEGTSVADLVEHLGINRFSLYNSFGDKLTLYRDALRRYLYTRGLTGLGPLQADDAD
MDALMNLVEEFAAKQKDQQFGCFMQNALLERCVEDEEVKRLGNELFEGLEQAFAKVLARYQTRERAAELAAFLVMQLQGI
RVLGKSGQFALLDAAMVVLRGEIQRWKSPI
>Mature_189_residues
ARSCNFCKEEKLEQAMNLFWQKGYEGTSVADLVEHLGINRFSLYNSFGDKLTLYRDALRRYLYTRGLTGLGPLQADDADM
DALMNLVEEFAAKQKDQQFGCFMQNALLERCVEDEEVKRLGNELFEGLEQAFAKVLARYQTRERAAELAAFLVMQLQGIR
VLGKSGQFALLDAAMVVLRGEIQRWKSPI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87082397, Length=180, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21677; Mature: 21546

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSCNFCKEEKLEQAMNLFWQKGYEGTSVADLVEHLGINRFSLYNSFGDKLTLYRDALR
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RYLYTRGLTGLGPLQADDADMDALMNLVEEFAAKQKDQQFGCFMQNALLERCVEDEEVKR
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHH
LGNELFEGLEQAFAKVLARYQTRERAAELAAFLVMQLQGIRVLGKSGQFALLDAAMVVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GEIQRWKSPI
HHHHHHCCCC
>Mature Secondary Structure 
ARSCNFCKEEKLEQAMNLFWQKGYEGTSVADLVEHLGINRFSLYNSFGDKLTLYRDALR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RYLYTRGLTGLGPLQADDADMDALMNLVEEFAAKQKDQQFGCFMQNALLERCVEDEEVKR
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHH
LGNELFEGLEQAFAKVLARYQTRERAAELAAFLVMQLQGIRVLGKSGQFALLDAAMVVLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GEIQRWKSPI
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]