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The map label for this gene is yliF [C]

Identifier: 119774221

GI number: 119774221

Start: 1311233

End: 1312921

Strand: Direct

Name: yliF [C]

Synonym: Sama_1084

Alternate gene names: 119774221

Gene position: 1311233-1312921 (Clockwise)

Preceding gene: 119774219

Following gene: 119774226

Centisome position: 30.45

GC content: 52.22

Gene sequence:

>1689_bases
GTGGCCCCGTCTGAGCAACCGAGAATCACAACACACATCATGGCTCGAATACTTGCAGCGATATTAGGCATTGCCCTGCT
TCTTCCTCTGCTTTGGTCAGCGAAGGTCAATGCCGCAGTTGCTCTGGATGCGCCTTACCAGTTTGTGGCTGCCGACGATG
ATGTACTTCCCACAGCCTTTGACGCCGTGCCCGATTGGCTTGATAAGCACAAAGACATCAAAAGACTCCCTTTAAGCGGT
GGCCAGTTTTATCTGGCTGTGCCCTTTATGGTGAATGAAAACCGCAGTGACTGGGTGGTCAACTTGCATAACTCCATCGC
CGAAAAGGTGGACTATCTGGTGCTTGGGAGGGATGGCAGTCGTCAGCTGGCGAGCAGCGGCTATTACGCGCCTTATCAGT
ATCTTTTCGATTACGGCCGTAACGTCACCCTGAGATACGGGGTGGAATATTGGCTGCTGGTCCGGGTGGAGTCGCGCTAT
TTCTCATCATTTCCCAAACTCGAAATCAATCCGGCTCCCGAACATCGGCAGCTAACCGATGGGTTGGCGGTGGCCGTGCT
GCTTTGTCTGGGAGGGCTGCTGTTTATCGCCTTCTACAACTTGCTGATTTACGGCTCCACCAGAGACAAGGCGTTCCTGT
ACTACGGGCTTTATGTCATTGTGTATCTGCTCGGTTGGGCCTTTACCTTCCATGTCCCTGCGCAGCTTTTGGGAATTCAT
GCTATTGGTGTGCATCATGTGTTTTTTATCGGGCTGCCAATTTTTAATATTTTGTTCTATAAACACTTTTTGCAACTCCC
CAGCAACTCCCCCCGTTTGTGGCGCTTAAGTCAGTACCTGCTTTGGGCCTGTATTCTGGCGCTGCCAACCAGTTGGCTGC
TGATTTCTTACACCGCCATTATTGCTTCGGTCTTGATTGGCGCCTGGATAGTGCTGGCCATAGTGGCGGGTAATGTGTGC
CTGATGAAGGGCTTCTCGCCGGCCCGTTATTTCATCATGGCATTTAGCTGTCTGCTGTTACCTGCCATGCTGATTCTGCC
CGGTAACATGGGGCTGACATCGGATATTATCGAATACGCCGAGTTTGCCACCCTGGCGGGGGGCACAGCCGACGCGCTGC
TGCTTTCTCTGGCATTGGCCAACAAGCTAAAGCTGCTGTCTGAAGAGCGTAAGGCCTATATCGAAGAACTGAGCTCCGCC
TGGGAAAAGGCCCGGGTCGACAGTCTTACCCAAATCGGCAATAGGTACGCCTTCGATGAATATCTGCAAACCTGCCATAC
CTTTGGTGAGGCGGTAACAAAACCTACGGCTCTGGTGCTGTTGGATGTGGATGGGATTAAGAAAGTCAACGACACCCTCG
GTCATCAGGTGGGGGATGAATTGCTGAGAACTCTGGTGCAGGAGCTTAAGTCGCTGGATATCCCCAAACTCAAACTCTTT
CGGGTGGGGGGAGATGAGTTTGCACTCTTTTTGGATGGGGCTTTCTTATCTCTGGTCACCTCCAAACTGGAAAACATAGA
AACCATCTTTGCCCGCCAGGGCTTTACCGATGCCGGCGTCAGCTTCGGATATGCCCTCGACAGCGAGGTGCACAAATCCC
ACGAATGGTTAAGGTCGGCTGACACCAGTATGTATTCCTTGAAAGCCGAAAAAAGGCGTGAGTTGGCTGTCGATGCCATG
GAGGCATGA

Upstream 100 bases:

>100_bases
GAGCCGCTACAATTGAAAAAATGTGTTTGTAGCAATAAAGTTGCAGCTTGCTGCCTGTCCATTCTGAATGGAATGTCCTG
TTATCAGGGAATGAGAACCT

Downstream 100 bases:

>100_bases
ATCATGGGGCGTGTGGGGGATAATCTGCTTTTTGTACCCACAACCTATAAAAAAGCGGCCAGAAGGCCGCTTTTTTAATG
CTCAAACACCGGCACGGCAA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 561

Protein sequence:

>562_residues
MAPSEQPRITTHIMARILAAILGIALLLPLLWSAKVNAAVALDAPYQFVAADDDVLPTAFDAVPDWLDKHKDIKRLPLSG
GQFYLAVPFMVNENRSDWVVNLHNSIAEKVDYLVLGRDGSRQLASSGYYAPYQYLFDYGRNVTLRYGVEYWLLVRVESRY
FSSFPKLEINPAPEHRQLTDGLAVAVLLCLGGLLFIAFYNLLIYGSTRDKAFLYYGLYVIVYLLGWAFTFHVPAQLLGIH
AIGVHHVFFIGLPIFNILFYKHFLQLPSNSPRLWRLSQYLLWACILALPTSWLLISYTAIIASVLIGAWIVLAIVAGNVC
LMKGFSPARYFIMAFSCLLLPAMLILPGNMGLTSDIIEYAEFATLAGGTADALLLSLALANKLKLLSEERKAYIEELSSA
WEKARVDSLTQIGNRYAFDEYLQTCHTFGEAVTKPTALVLLDVDGIKKVNDTLGHQVGDELLRTLVQELKSLDIPKLKLF
RVGGDEFALFLDGAFLSLVTSKLENIETIFARQGFTDAGVSFGYALDSEVHKSHEWLRSADTSMYSLKAEKRRELAVDAM
EA

Sequences:

>Translated_562_residues
MAPSEQPRITTHIMARILAAILGIALLLPLLWSAKVNAAVALDAPYQFVAADDDVLPTAFDAVPDWLDKHKDIKRLPLSG
GQFYLAVPFMVNENRSDWVVNLHNSIAEKVDYLVLGRDGSRQLASSGYYAPYQYLFDYGRNVTLRYGVEYWLLVRVESRY
FSSFPKLEINPAPEHRQLTDGLAVAVLLCLGGLLFIAFYNLLIYGSTRDKAFLYYGLYVIVYLLGWAFTFHVPAQLLGIH
AIGVHHVFFIGLPIFNILFYKHFLQLPSNSPRLWRLSQYLLWACILALPTSWLLISYTAIIASVLIGAWIVLAIVAGNVC
LMKGFSPARYFIMAFSCLLLPAMLILPGNMGLTSDIIEYAEFATLAGGTADALLLSLALANKLKLLSEERKAYIEELSSA
WEKARVDSLTQIGNRYAFDEYLQTCHTFGEAVTKPTALVLLDVDGIKKVNDTLGHQVGDELLRTLVQELKSLDIPKLKLF
RVGGDEFALFLDGAFLSLVTSKLENIETIFARQGFTDAGVSFGYALDSEVHKSHEWLRSADTSMYSLKAEKRRELAVDAM
EA
>Mature_561_residues
APSEQPRITTHIMARILAAILGIALLLPLLWSAKVNAAVALDAPYQFVAADDDVLPTAFDAVPDWLDKHKDIKRLPLSGG
QFYLAVPFMVNENRSDWVVNLHNSIAEKVDYLVLGRDGSRQLASSGYYAPYQYLFDYGRNVTLRYGVEYWLLVRVESRYF
SSFPKLEINPAPEHRQLTDGLAVAVLLCLGGLLFIAFYNLLIYGSTRDKAFLYYGLYVIVYLLGWAFTFHVPAQLLGIHA
IGVHHVFFIGLPIFNILFYKHFLQLPSNSPRLWRLSQYLLWACILALPTSWLLISYTAIIASVLIGAWIVLAIVAGNVCL
MKGFSPARYFIMAFSCLLLPAMLILPGNMGLTSDIIEYAEFATLAGGTADALLLSLALANKLKLLSEERKAYIEELSSAW
EKARVDSLTQIGNRYAFDEYLQTCHTFGEAVTKPTALVLLDVDGIKKVNDTLGHQVGDELLRTLVQELKSLDIPKLKLFR
VGGDEFALFLDGAFLSLVTSKLENIETIFARQGFTDAGVSFGYALDSEVHKSHEWLRSADTSMYSLKAEKRRELAVDAME
A

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=33.7349397590361, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.1204819277108, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=35.6687898089172, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=29.9435028248588, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=33.1428571428571, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=30, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 62764; Mature: 62633

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSEQPRITTHIMARILAAILGIALLLPLLWSAKVNAAVALDAPYQFVAADDDVLPTAF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHH
DAVPDWLDKHKDIKRLPLSGGQFYLAVPFMVNENRSDWVVNLHNSIAEKVDYLVLGRDGS
HHHHHHHHCCCCHHCCCCCCCCEEEEEEEEECCCCCCEEEEHHHHHHHHHCEEEECCCCC
RQLASSGYYAPYQYLFDYGRNVTLRYGVEYWLLVRVESRYFSSFPKLEINPAPEHRQLTD
HHHHCCCCCCHHHHHHHCCCCEEEEECCEEEEEEEEHHHHHHCCCCEECCCCCCHHHHHH
GLAVAVLLCLGGLLFIAFYNLLIYGSTRDKAFLYYGLYVIVYLLGWAFTFHVPAQLLGIH
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIGVHHVFFIGLPIFNILFYKHFLQLPSNSPRLWRLSQYLLWACILALPTSWLLISYTAI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IASVLIGAWIVLAIVAGNVCLMKGFSPARYFIMAFSCLLLPAMLILPGNMGLTSDIIEYA
HHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
EFATLAGGTADALLLSLALANKLKLLSEERKAYIEELSSAWEKARVDSLTQIGNRYAFDE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
YLQTCHTFGEAVTKPTALVLLDVDGIKKVNDTLGHQVGDELLRTLVQELKSLDIPKLKLF
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
RVGGDEFALFLDGAFLSLVTSKLENIETIFARQGFTDAGVSFGYALDSEVHKSHEWLRSA
EECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
DTSMYSLKAEKRRELAVDAMEA
CCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
APSEQPRITTHIMARILAAILGIALLLPLLWSAKVNAAVALDAPYQFVAADDDVLPTAF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHH
DAVPDWLDKHKDIKRLPLSGGQFYLAVPFMVNENRSDWVVNLHNSIAEKVDYLVLGRDGS
HHHHHHHHCCCCHHCCCCCCCCEEEEEEEEECCCCCCEEEEHHHHHHHHHCEEEECCCCC
RQLASSGYYAPYQYLFDYGRNVTLRYGVEYWLLVRVESRYFSSFPKLEINPAPEHRQLTD
HHHHCCCCCCHHHHHHHCCCCEEEEECCEEEEEEEEHHHHHHCCCCEECCCCCCHHHHHH
GLAVAVLLCLGGLLFIAFYNLLIYGSTRDKAFLYYGLYVIVYLLGWAFTFHVPAQLLGIH
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIGVHHVFFIGLPIFNILFYKHFLQLPSNSPRLWRLSQYLLWACILALPTSWLLISYTAI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IASVLIGAWIVLAIVAGNVCLMKGFSPARYFIMAFSCLLLPAMLILPGNMGLTSDIIEYA
HHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
EFATLAGGTADALLLSLALANKLKLLSEERKAYIEELSSAWEKARVDSLTQIGNRYAFDE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
YLQTCHTFGEAVTKPTALVLLDVDGIKKVNDTLGHQVGDELLRTLVQELKSLDIPKLKLF
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
RVGGDEFALFLDGAFLSLVTSKLENIETIFARQGFTDAGVSFGYALDSEVHKSHEWLRSA
EECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
DTSMYSLKAEKRRELAVDAMEA
CCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA