| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is recX [H]
Identifier: 119774184
GI number: 119774184
Start: 1266581
End: 1267018
Strand: Direct
Name: recX [H]
Synonym: Sama_1047
Alternate gene names: 119774184
Gene position: 1266581-1267018 (Clockwise)
Preceding gene: 119774183
Following gene: 119774185
Centisome position: 29.41
GC content: 51.6
Gene sequence:
>438_bases ATGAATCACGCGCTGGCATCCCTTGCCAGGCGTGATCACAGCCGCAATGAACTCAAGCTTAAATTGCTCGCCAAAGGACA CAATGCCCTGGACATTGAGCGGGTGCTGGATGAGTGTGAAGCTAAAGGCTACCTGAATGACAGTCGTTATGGAGCATCAG TCGTTCGCTCATCGGTACTGAAAGGTCATGGCGCTGCCAGAGCGCGCCAGGCAATGATAGCCAAGGGATTGGATAAAGAG GTTATTCAACACAATCTGGAAGGTTGCGAGGTGGATTGGTATGCCCAGGCCCGGGCTAAGGCGCTGAAAAAATTTGGTGC GACCAAACCTGTCGATGCCAAGGACAGGGCAAAGCGTATACGCTATCTTGCCGGACAAGGATTCAGTTTTGACGAGATTG CCCACGCTCTGGATTTTGACCCTTACGATATGGAATGA
Upstream 100 bases:
>100_bases TGCTGCTGTCACACAGCTCATCTTCCGGTAGTGCCGATGAAGTAGAAGGCGATGAAAACATCGACTTCGAAACCGGAGAA GTGTTCTGAATCAGGACCTG
Downstream 100 bases:
>100_bases AGACCGCAACCGATGCGGTCTTTTTGTATCTGCCTTTCTGTTCTTCCTTAGCGTTTTTTACCTTGGCCCTGTCCTTTGTT TGCCTCGGATTTCGCGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MNHALASLARRDHSRNELKLKLLAKGHNALDIERVLDECEAKGYLNDSRYGASVVRSSVLKGHGAARARQAMIAKGLDKE VIQHNLEGCEVDWYAQARAKALKKFGATKPVDAKDRAKRIRYLAGQGFSFDEIAHALDFDPYDME
Sequences:
>Translated_145_residues MNHALASLARRDHSRNELKLKLLAKGHNALDIERVLDECEAKGYLNDSRYGASVVRSSVLKGHGAARARQAMIAKGLDKE VIQHNLEGCEVDWYAQARAKALKKFGATKPVDAKDRAKRIRYLAGQGFSFDEIAHALDFDPYDME >Mature_145_residues MNHALASLARRDHSRNELKLKLLAKGHNALDIERVLDECEAKGYLNDSRYGASVVRSSVLKGHGAARARQAMIAKGLDKE VIQHNLEGCEVDWYAQARAKALKKFGATKPVDAKDRAKRIRYLAGQGFSFDEIAHALDFDPYDME
Specific function: Modulates recA activity [H]
COG id: COG2137
COG function: function code R; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recX family [H]
Homologues:
Organism=Escherichia coli, GI1789050, Length=143, Percent_Identity=37.0629370629371, Blast_Score=91, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003783 [H]
Pfam domain/function: PF02631 RecX [H]
EC number: NA
Molecular weight: Translated: 16195; Mature: 16195
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHALASLARRDHSRNELKLKLLAKGHNALDIERVLDECEAKGYLNDSRYGASVVRSSVL CCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH KGHGAARARQAMIAKGLDKEVIQHNLEGCEVDWYAQARAKALKKFGATKPVDAKDRAKRI HCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH RYLAGQGFSFDEIAHALDFDPYDME HHHHCCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure MNHALASLARRDHSRNELKLKLLAKGHNALDIERVLDECEAKGYLNDSRYGASVVRSSVL CCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH KGHGAARARQAMIAKGLDKEVIQHNLEGCEVDWYAQARAKALKKFGATKPVDAKDRAKRI HCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH RYLAGQGFSFDEIAHALDFDPYDME HHHHCCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA