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The map label for this gene is nlpD [H]

Identifier: 119774180

GI number: 119774180

Start: 1260578

End: 1261468

Strand: Direct

Name: nlpD [H]

Synonym: Sama_1043

Alternate gene names: 119774180

Gene position: 1260578-1261468 (Clockwise)

Preceding gene: 119774179

Following gene: 119774181

Centisome position: 29.27

GC content: 48.71

Gene sequence:

>891_bases
ATGTTGAGATTGACAACTTGCTGCCTCTGTTTGCTCTTGTTGGCTGGTTGCAGCATGCAGGCGCACTCACCTGCACCAGT
CGAAAGCCTGAATTCTAAAAAAAAGCCCGTGCACCCCAAAGGAAGTCTGACCAGTTCAACTTATAAAGTGAAAAAGGGCG
ATACCCTTTACTCCATTGCTTGGGGAGCTGGCACGGATTACCACGAATTAGCCAAGATTAATCAACTAAATAAACCGTAC
ACTATCTTTCCCGGGCAGGTGTTAAAGCTGTCATCGACGGCTAAAAACACCAAGCCAACAAAGCAAACTACCACAGCTTC
CTCGAAACCGGATCCCAAGTCGGTAACAGCTAAAAACGATAAAAAACAAAGCGCTAGCCCAGTTGTGTCCAGCGGTCAAT
CATCCGTAGTAGCACAGAAAAAAACACTTGATCCGAAAAATAAAGCTGATTACGCTGTAACAAGTTCACAACAAGGCGAT
AACCCGGTAGCGACTGCCACTGACGGTTTACCGAATGAAGTAGCACGCTGGCTGTGGCCAGCAAAGGGACGCTTAATTGG
GACTTTCTCTGCCAGAGAGCAGGGGAGTAAAGGGATCAAAATAGCGGGAAGACGCGGGGATCCGGTCAGAGCCGCCGCCG
AAGGGCGAGTGGTTTACTCTGGCAACGCACTGAGAGGCTACGGCAACCTTGTCATTATCAAGCACAGCGAGGACTTCCTT
AGTGCTTATGCCCATCTGGATAAGATCCTGGTGACAGAAAAGCAACGGGTCAGTGCAGGACAGACGGTTGCGACAATGGG
GAATACTGACGCTGAACACGTGATGCTTCATTTCGAGATCCGTGATCACGGCGTATCAGTTAATCCACTTAAGTATTTGC
CGAAGAAATAA

Upstream 100 bases:

>100_bases
GGCAGGAGTATTCCTCCGAGGTCATTGAGTCGGTAAAGTTTGTGCCCTTGGTCAACGGAAACCTGGCGTAGGTCATTATG
ACTTCGGGAGCTGCTCATTC

Downstream 100 bases:

>100_bases
TTTACGGCAGCCAATTTTGGCATTTGGAGGATAAAAAAGTGATTTAAAGTCATCAACAAATTTTGGGTTTGGGAGACAAT
ATTATGAGCTTGAAAAACAA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLRLTTCCLCLLLLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIAWGAGTDYHELAKINQLNKPY
TIFPGQVLKLSSTAKNTKPTKQTTTASSKPDPKSVTAKNDKKQSASPVVSSGQSSVVAQKKTLDPKNKADYAVTSSQQGD
NPVATATDGLPNEVARWLWPAKGRLIGTFSAREQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALRGYGNLVIIKHSEDFL
SAYAHLDKILVTEKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGVSVNPLKYLPKK

Sequences:

>Translated_296_residues
MLRLTTCCLCLLLLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIAWGAGTDYHELAKINQLNKPY
TIFPGQVLKLSSTAKNTKPTKQTTTASSKPDPKSVTAKNDKKQSASPVVSSGQSSVVAQKKTLDPKNKADYAVTSSQQGD
NPVATATDGLPNEVARWLWPAKGRLIGTFSAREQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALRGYGNLVIIKHSEDFL
SAYAHLDKILVTEKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGVSVNPLKYLPKK
>Mature_296_residues
MLRLTTCCLCLLLLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIAWGAGTDYHELAKINQLNKPY
TIFPGQVLKLSSTAKNTKPTKQTTTASSKPDPKSVTAKNDKKQSASPVVSSGQSSVVAQKKTLDPKNKADYAVTSSQQGD
NPVATATDGLPNEVARWLWPAKGRLIGTFSAREQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALRGYGNLVIIKHSEDFL
SAYAHLDKILVTEKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGVSVNPLKYLPKK

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=267, Percent_Identity=43.4456928838951, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI87082174, Length=283, Percent_Identity=40.2826855123675, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI87082297, Length=140, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 31840; Mature: 31840

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLTTCCLCLLLLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIA
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEEE
WGAGTDYHELAKINQLNKPYTIFPGQVLKLSSTAKNTKPTKQTTTASSKPDPKSVTAKND
ECCCCCHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KKQSASPVVSSGQSSVVAQKKTLDPKNKADYAVTSSQQGDNPVATATDGLPNEVARWLWP
CCCCCCHHHHCCCCCEEEHHHCCCCCCCCCEEEECCCCCCCCCEECCCCCHHHHHHHHCC
AKGRLIGTFSAREQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALRGYGNLVIIKHSEDFL
CCCCEEEEECCCCCCCCCEEEECCCCCCCEECCCCEEEEECCEEECCCCEEEEECCHHHH
SAYAHLDKILVTEKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGVSVNPLKYLPKK
HHHHHHHHHHHCCHHHHCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHHCCCCC
>Mature Secondary Structure
MLRLTTCCLCLLLLAGCSMQAHSPAPVESLNSKKKPVHPKGSLTSSTYKVKKGDTLYSIA
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEEE
WGAGTDYHELAKINQLNKPYTIFPGQVLKLSSTAKNTKPTKQTTTASSKPDPKSVTAKND
ECCCCCHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KKQSASPVVSSGQSSVVAQKKTLDPKNKADYAVTSSQQGDNPVATATDGLPNEVARWLWP
CCCCCCHHHHCCCCCEEEHHHCCCCCCCCCEEEECCCCCCCCCEECCCCCHHHHHHHHCC
AKGRLIGTFSAREQGSKGIKIAGRRGDPVRAAAEGRVVYSGNALRGYGNLVIIKHSEDFL
CCCCEEEEECCCCCCCCCEEEECCCCCCCEECCCCEEEEECCEEECCCCEEEEECCHHHH
SAYAHLDKILVTEKQRVSAGQTVATMGNTDAEHVMLHFEIRDHGVSVNPLKYLPKK
HHHHHHHHHHHCCHHHHCCCCEEEECCCCCCCEEEEEEEEECCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]