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The map label for this gene is nusB

Identifier: 119774157

GI number: 119774157

Start: 1234514

End: 1234918

Strand: Direct

Name: nusB

Synonym: Sama_1020

Alternate gene names: 119774157

Gene position: 1234514-1234918 (Clockwise)

Preceding gene: 119774156

Following gene: 119774158

Centisome position: 28.67

GC content: 53.33

Gene sequence:

>405_bases
ATGAAGCCTTCAGAGCGCCGTAAGGCCCGTCGCCTGGCGGTCCAAGCTATCTATTCCTGGCAACTGAGCGGCAATAACGT
TGCCGATGTCGAGCACGAGTTCCTGACCGAACAAGAGCTGGACGGTGTCGATGTTGCTTACTTCCGGGAGTTGTTTGCTG
GCGCTGCAACCAAAACCGCTCAGCTGGATGAAAAGCTGAAACCCCTGCTCGATCGTCCTCTTGAGGAAGTGTCACCAGTA
GAAAAAGCCATTTTGCGCCTGGCAGTCTACGAGCTGACTTTCCGCAAGGACGTGCCTTACAAGGTGGTGATCAACGAAGC
CATCGAGCTGGCCAAATCCTTCGGTGCCGAAGACGGACACAAATTCGTTAACGGTATTTTGGATAAGCTGGTTGCACGCA
ACTAA

Upstream 100 bases:

>100_bases
CAAGGCCGGCAACAAGGGCGGCGAAGCTGCTCTGGGCCTGCTGGAAATGGTCAATGTACTTAATGCTATTGATAAAGAGC
TGTAATTAGTAGGAAAAATC

Downstream 100 bases:

>100_bases
ATGACAGACGGTGCCTGAGGGTGCCGTTTTTCATTTTCCGGTGTTCATTTTTCAATGGGTCGGCGGGCCGACATCAAGGC
CGACGCCGGAATGACAGTGA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQELDGVDVAYFRELFAGAATKTAQLDEKLKPLLDRPLEEVSPV
EKAILRLAVYELTFRKDVPYKVVINEAIELAKSFGAEDGHKFVNGILDKLVARN

Sequences:

>Translated_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQELDGVDVAYFRELFAGAATKTAQLDEKLKPLLDRPLEEVSPV
EKAILRLAVYELTFRKDVPYKVVINEAIELAKSFGAEDGHKFVNGILDKLVARN
>Mature_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQELDGVDVAYFRELFAGAATKTAQLDEKLKPLLDRPLEEVSPV
EKAILRLAVYELTFRKDVPYKVVINEAIELAKSFGAEDGHKFVNGILDKLVARN

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=69.7674418604651, Blast_Score=176, Evalue=4e-46,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_SHEAM (A1S4C1)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926897.1
- ProteinModelPortal:   A1S4C1
- SMR:   A1S4C1
- STRING:   A1S4C1
- GeneID:   4603272
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1020
- NMPDR:   fig|326297.7.peg.960
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- PhylomeDB:   A1S4C1
- ProtClustDB:   PRK00202
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15172; Mature: 15172

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQELDGVDVAYFRELFAGAATKTA
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
QLDEKLKPLLDRPLEEVSPVEKAILRLAVYELTFRKDVPYKVVINEAIELAKSFGAEDGH
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH
KFVNGILDKLVARN
HHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQELDGVDVAYFRELFAGAATKTA
CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
QLDEKLKPLLDRPLEEVSPVEKAILRLAVYELTFRKDVPYKVVINEAIELAKSFGAEDGH
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH
KFVNGILDKLVARN
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA