| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is thiL [H]
Identifier: 119774158
GI number: 119774158
Start: 1234973
End: 1235974
Strand: Direct
Name: thiL [H]
Synonym: Sama_1021
Alternate gene names: 119774158
Gene position: 1234973-1235974 (Clockwise)
Preceding gene: 119774157
Following gene: 119774159
Centisome position: 28.68
GC content: 56.69
Gene sequence:
>1002_bases ATGGGTCGGCGGGCCGACATCAAGGCCGACGCCGGAATGACAGTGAAAGAATTCCAACTTATCGATCAGTATTTCTGTGG CCGTGGCCCGGTGCGTCGGGATGTTAAACACGGTATTGGCGACGACTGTGCCCTGGTTCAACCGGCTGAGCACAAGCAGA TTGCCATCTCCTGTGACACCCTGATAGAAGGGGTGCATTTCTTCAACGATATGCCTGCCTGGGCACTGGGTTACAAGGCG CTTGCCGTCAACCTGTCAGACTTGGCCGCCATGGGCGCCGAGCCAGCCTGGTTTACTCTTGGCCTTAGTTTACCATCGGT GGATGAAAGCTGGCTCGCTGCCTTTAGCGAAGGCCTGTTTGAGGCCGCCGAATATTATGGTATCGCGCTGATTGGCGGCG ATACCACCCAAAGCCCTGTGAAGGTCATAGCCGTTACCATCAATGGTCAGGTGCCCGAAGGCAAGGCGCTCACACGCTAC GGTGCCCGTAGCGGCGACTGGATTTACGTTACTGGCTCGTTGGGAGACTCTGCGTTGGGGCTGGATATCCTCAGAGGACG TCAGCAAAGTCGCCCGGAGCACAGTGAGTACCTGATTGAGCGTCATTACCGACCTACACCAAGGGTACTTGCTGGCCAAT CTTTGCGAGGTCTGGCATCCAGTGCCATCGACCTGTCCGATGGTTTGATGTCTGATCTTGGCCATGTGCTGAAGGCGTCC AATGTGGGTGCCTACATTGACGTGGAAAAGTTACCCCTGTCACAGGCGATGAAGGACTCGGTGCCGCTTGAGCAGGCGCT TGGGTATGCGCTCACCGGTGGAGAGGACTACGAGCTGCTCTTTACCGTGCCAGAGGCGCAACGTGGTGCGCTGGAAATTG CGCTGGCCAATGCCGGGGTGAAGTTTTTCCGCATCGGGCAAATCACGGCGGGCAGCACCCTCAAGCTGACCCATAACGGT GAGCCTTTCACACCGATGAACAAAGGTTTTGAGCATTTCTGA
Upstream 100 bases:
>100_bases CAAATTCGTTAACGGTATTTTGGATAAGCTGGTTGCACGCAACTAAATGACAGACGGTGCCTGAGGGTGCCGTTTTTCAT TTTCCGGTGTTCATTTTTCA
Downstream 100 bases:
>100_bases TGGGTTGGCGCAGTCAAGATGAGGCGCTGTCGCGTCTGTCGTTAAAAAATCCCTGGCATTTTCTTGCCCTTGGCTTTGGC AGTGGTTTGGCCAAAAAGGC
Product: thiamine-phosphate kinase
Products: NA
Alternate protein names: Thiamine-phosphate kinase [H]
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MGRRADIKADAGMTVKEFQLIDQYFCGRGPVRRDVKHGIGDDCALVQPAEHKQIAISCDTLIEGVHFFNDMPAWALGYKA LAVNLSDLAAMGAEPAWFTLGLSLPSVDESWLAAFSEGLFEAAEYYGIALIGGDTTQSPVKVIAVTINGQVPEGKALTRY GARSGDWIYVTGSLGDSALGLDILRGRQQSRPEHSEYLIERHYRPTPRVLAGQSLRGLASSAIDLSDGLMSDLGHVLKAS NVGAYIDVEKLPLSQAMKDSVPLEQALGYALTGGEDYELLFTVPEAQRGALEIALANAGVKFFRIGQITAGSTLKLTHNG EPFTPMNKGFEHF
Sequences:
>Translated_333_residues MGRRADIKADAGMTVKEFQLIDQYFCGRGPVRRDVKHGIGDDCALVQPAEHKQIAISCDTLIEGVHFFNDMPAWALGYKA LAVNLSDLAAMGAEPAWFTLGLSLPSVDESWLAAFSEGLFEAAEYYGIALIGGDTTQSPVKVIAVTINGQVPEGKALTRY GARSGDWIYVTGSLGDSALGLDILRGRQQSRPEHSEYLIERHYRPTPRVLAGQSLRGLASSAIDLSDGLMSDLGHVLKAS NVGAYIDVEKLPLSQAMKDSVPLEQALGYALTGGEDYELLFTVPEAQRGALEIALANAGVKFFRIGQITAGSTLKLTHNG EPFTPMNKGFEHF >Mature_332_residues GRRADIKADAGMTVKEFQLIDQYFCGRGPVRRDVKHGIGDDCALVQPAEHKQIAISCDTLIEGVHFFNDMPAWALGYKAL AVNLSDLAAMGAEPAWFTLGLSLPSVDESWLAAFSEGLFEAAEYYGIALIGGDTTQSPVKVIAVTINGQVPEGKALTRYG ARSGDWIYVTGSLGDSALGLDILRGRQQSRPEHSEYLIERHYRPTPRVLAGQSLRGLASSAIDLSDGLMSDLGHVLKASN VGAYIDVEKLPLSQAMKDSVPLEQALGYALTGGEDYELLFTVPEAQRGALEIALANAGVKFFRIGQITAGSTLKLTHNGE PFTPMNKGFEHF
Specific function: Thiamine biosynthesis. [C]
COG id: COG0611
COG function: function code H; Thiamine monophosphate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiamine-monophosphate kinase family [H]
Homologues:
Organism=Escherichia coli, GI1786619, Length=323, Percent_Identity=57.2755417956656, Blast_Score=350, Evalue=6e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000728 - InterPro: IPR010918 - InterPro: IPR016188 - InterPro: IPR006283 [H]
Pfam domain/function: PF00586 AIRS; PF02769 AIRS_C [H]
EC number: =2.7.4.16 [H]
Molecular weight: Translated: 35903; Mature: 35772
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRRADIKADAGMTVKEFQLIDQYFCGRGPVRRDVKHGIGDDCALVQPAEHKQIAISCDT CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEECCCCCCEEEEEHHH LIEGVHFFNDMPAWALGYKALAVNLSDLAAMGAEPAWFTLGLSLPSVDESWLAAFSEGLF HHHHHHHHCCCCHHHHCHHHEEEEHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH EAAEYYGIALIGGDTTQSPVKVIAVTINGQVPEGKALTRYGARSGDWIYVTGSLGDSALG HHHHHEEEEEECCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCHHH LDILRGRQQSRPEHSEYLIERHYRPTPRVLAGQSLRGLASSAIDLSDGLMSDLGHVLKAS HHHHHCCCCCCCCHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHC NVGAYIDVEKLPLSQAMKDSVPLEQALGYALTGGEDYELLFTVPEAQRGALEIALANAGV CCCEEEEECCCCHHHHHHCCCCHHHHCCEEEECCCCEEEEEECCCCCCCEEEEEEECCCE KFFRIGQITAGSTLKLTHNGEPFTPMNKGFEHF EEEEEEEEECCCEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure GRRADIKADAGMTVKEFQLIDQYFCGRGPVRRDVKHGIGDDCALVQPAEHKQIAISCDT CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEECCCCCCEEEEEHHH LIEGVHFFNDMPAWALGYKALAVNLSDLAAMGAEPAWFTLGLSLPSVDESWLAAFSEGLF HHHHHHHHCCCCHHHHCHHHEEEEHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH EAAEYYGIALIGGDTTQSPVKVIAVTINGQVPEGKALTRYGARSGDWIYVTGSLGDSALG HHHHHEEEEEECCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCHHH LDILRGRQQSRPEHSEYLIERHYRPTPRVLAGQSLRGLASSAIDLSDGLMSDLGHVLKAS HHHHHCCCCCCCCHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHC NVGAYIDVEKLPLSQAMKDSVPLEQALGYALTGGEDYELLFTVPEAQRGALEIALANAGV CCCEEEEECCCCHHHHHHCCCCHHHHCCEEEECCCCEEEEEECCCCCCCEEEEEEECCCE KFFRIGQITAGSTLKLTHNGEPFTPMNKGFEHF EEEEEEEEECCCEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]