| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774138
Identifier: 119774138
GI number: 119774138
Start: 1213024
End: 1214100
Strand: Direct
Name: 119774138
Synonym: Sama_1001
Alternate gene names: NA
Gene position: 1213024-1214100 (Clockwise)
Preceding gene: 119774137
Following gene: 119774140
Centisome position: 28.17
GC content: 53.2
Gene sequence:
>1077_bases ATGTCTCCTGAACGCACCGAGGGACTTCGCCTTTGGTATTTCAAAGGCTTTTCCAGCAGGGCTAACCCAATCCTGAGAAT CGCCGTAGCTGCGCTGGTACCGCTGTTTGTACTCCATTATCTGGAAAACCCGTTGCCCATGTTGGTGTCGGTATTTGCGG TGATCATGCTCACCCTGATGCCGGGACGCCCCTCACTGCAGGTTCTGTCGAAACTCAGCATGGTAGTGGTGGCTGCCGCC ATGGTGCAGCATGCTGCCGGTATTCTGCTGTCGGGAACGGGCACCGGCTCCTGGATGTTTTTATTTGCGGTGCTCTTCTA CAGCCTGTCGCGAATCCACCTGAACCCCAAAGATATCGTCGGGACTATGATGATGATTCTTGGGATCATGGTGACTATAT TGCACTGGCAATTTGCCACGACAGTATCTGACTTACCGCTGGTACTGGCGGCCAACTTCGTGGGCGCCATTGTGATGGTG TATCTGGTATTTTGGCTGTTTCCAGGGGAAGAGCTGGGCGCCGAGGCTGACACGGCCTGGGAAGTAACCCCCAGTCACTG GCTTAAAATTGTTGTTAAGTCACTATTTTTATTACTGGTAATATTTTTGCTGATTGATTCGGATAACAGTCAGAGCCTGC TTATCGCTATTACGCTTGCCAATCTCATCAAAGATCCCAATCCCATGGCCGGAACCCACAATGGACGGCAAAGGCTGTGG ACGACCGCGGTGGGAGTGCTGCTGACATTACCCTTATTGTTGGCATTTTGGCTGGATATGCACTGGTGGCTGTTGATGTT GTTTGCCATTGCCCTGGCCTTGTGGGGCAGTGCAACGGCGCTGGAACACAGGGTATCCATGGCAGAGTATCAACTGCTGA TGAGCAGCTTTGTCATGCTGGTTTATCAGGTCATCAGCCATGATGGCACCAGCTCTCTCACCTCGTCCCTCACCCGATTT GGGGCCGTGGTACTGGCTGTTTTACTGGGGGTGATGATGCTGGGAATGCTGTCTGAACTTGGGGTGACTCGCACCGGTAG CCGTGTGGCCAAGCCCAGTAACGTGGGCCAAGACTGA
Upstream 100 bases:
>100_bases CGTTTTGGCTCTCAGGTGACAGTGGCGTTTTACACCGGTGAAAGCAGTGTGGGAGAGACCCTTGCCCAACTGTGGCTGTG GTGCTGGAGTAAGCTGACTT
Downstream 100 bases:
>100_bases CTTGGTGTTTACCGGTGAAGCCTTAATGTTAGCAGGTGAGACCTCAGAGCTTGCCGGTGAGGCGGGCGTATTTTATCAGC AGCTCATCCTGACTCTCAGG
Product: major facilitator superfamily permease
Products: NA
Alternate protein names: Permease; Permease Facilitator Superfamily; DMT Family Permease; Permease Of Drug/Metabolite Transporter
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MSPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLMPGRPSLQVLSKLSMVVVAAA MVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIVGTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMV YLVFWLFPGEELGAEADTAWEVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVMLVYQVISHDGTSSLTSSLTRF GAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD
Sequences:
>Translated_358_residues MSPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLMPGRPSLQVLSKLSMVVVAAA MVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIVGTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMV YLVFWLFPGEELGAEADTAWEVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVMLVYQVISHDGTSSLTSSLTRF GAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD >Mature_357_residues SPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLMPGRPSLQVLSKLSMVVVAAAM VQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIVGTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMVY LVFWLFPGEELGAEADTAWEVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLWT TAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVMLVYQVISHDGTSSLTSSLTRFG AVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39327; Mature: 39196
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLM CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC PGRPSLQVLSKLSMVVVAAAMVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIV CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH GTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMVYLVFWLFPGEELGAEADTAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC EVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VYQVISHDGTSSLTSSLTRFGAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLM CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC PGRPSLQVLSKLSMVVVAAAMVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIV CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH GTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMVYLVFWLFPGEELGAEADTAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC EVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VYQVISHDGTSSLTSSLTRFGAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA