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The map label for this gene is deoC

Identifier: 119774110

GI number: 119774110

Start: 1176746

End: 1177519

Strand: Direct

Name: deoC

Synonym: Sama_0973

Alternate gene names: 119774110

Gene position: 1176746-1177519 (Clockwise)

Preceding gene: 119774109

Following gene: 119774111

Centisome position: 27.33

GC content: 54.52

Gene sequence:

>774_bases
ATGAGCGATCTTAAAAAAGCAGCCCAGCGTGCCATTGAGTTGATGGACCTCACTACGCTGAACGACGACGATACCGCTGA
AAAAGTGATTGAGCTTTGCAAAAAAGCCGTTACTCCAGCTGGTCACACCGCCGCTATCTGCATCTATCCCCGTTTTATTC
CCATCGCCCGCAAGACTCTGATTGAACTCGATGCCGAAGACATCCAAATCGCCACTGTGACCAACTTCCCTCACGGTAAC
GACGATATCGCGATTGCTGTGCTCGAAACCCGCGCGGCCGTTGCGTACGGTGCTGATGAAGTGGACGTGGTTTTCCCATA
CCGCGCCCTGATGGAAGGCGATGAAACCGTGGGCTTTGAGCTGGTTAAAGCTTGTAAAGAAGCCTGTGGTGACGATGTGC
TTCTTAAAGTCATCATCGAGTCCGGTGAACTGAAAGATCCAGCCCTTATCCGCAAGGCCTCTGAAATTTCTATCGATGCC
GGTGCTGATTTCATCAAGACCTCCACCGGTAAGGTCCCAGTTAACGCCACTTTGGAAGCCGCTGAAATCATGCTGACCGT
GATTGCCGAAAAGAACCGTGCTGTAGGCTTCAAGCCAGCCGGTGGCGTGCGTGATGCCGCTGCGGCTGCCGAGTTCCTGG
GGACTGCGGCTCGCATCCTTGGTGAAGACTGGGTGACCCCACGAACCTTCCGTTTCGGTGCTTCCAGCCTGCTGTCCAGC
TTGCTGCATACACTGGAACTGGCCGATGCGCCTAAAGGTGCCCAGGGCTACTGA

Upstream 100 bases:

>100_bases
CCTGAAGGCCCGGCCATAATTATTCCAACAACCTGCCACCTCACGGCGTTGCCCAGGACAAGATTTCTGTTTCATTTGAA
TTACGTCTCGGAGAACAACT

Downstream 100 bases:

>100_bases
GCCCCGGTCTGATTTGTGATCCGCGTCGAAACGAAGCGATTTAACTTTGGCTAATATGAGTCTGTAATATTTTTACAGTT
TCGACGTTCCAGAGGACGAA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSDLKKAAQRAIELMDLTTLNDDDTAEKVIELCKKAVTPAGHTAAICIYPRFIPIARKTLIELDAEDIQIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGDETVGFELVKACKEACGDDVLLKVIIESGELKDPALIRKASEISIDA
GADFIKTSTGKVPVNATLEAAEIMLTVIAEKNRAVGFKPAGGVRDAAAAAEFLGTAARILGEDWVTPRTFRFGASSLLSS
LLHTLELADAPKGAQGY

Sequences:

>Translated_257_residues
MSDLKKAAQRAIELMDLTTLNDDDTAEKVIELCKKAVTPAGHTAAICIYPRFIPIARKTLIELDAEDIQIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGDETVGFELVKACKEACGDDVLLKVIIESGELKDPALIRKASEISIDA
GADFIKTSTGKVPVNATLEAAEIMLTVIAEKNRAVGFKPAGGVRDAAAAAEFLGTAARILGEDWVTPRTFRFGASSLLSS
LLHTLELADAPKGAQGY
>Mature_256_residues
SDLKKAAQRAIELMDLTTLNDDDTAEKVIELCKKAVTPAGHTAAICIYPRFIPIARKTLIELDAEDIQIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMEGDETVGFELVKACKEACGDDVLLKVIIESGELKDPALIRKASEISIDAG
ADFIKTSTGKVPVNATLEAAEIMLTVIAEKNRAVGFKPAGGVRDAAAAAEFLGTAARILGEDWVTPRTFRFGASSLLSSL
LHTLELADAPKGAQGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=251, Percent_Identity=37.4501992031873, Blast_Score=146, Evalue=2e-35,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=68.2203389830508, Blast_Score=309, Evalue=1e-85,
Organism=Caenorhabditis elegans, GI17533015, Length=250, Percent_Identity=40.8, Blast_Score=174, Evalue=5e-44,
Organism=Drosophila melanogaster, GI19922098, Length=256, Percent_Identity=38.28125, Blast_Score=144, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_SHEAM (A1S474)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926850.1
- ProteinModelPortal:   A1S474
- SMR:   A1S474
- STRING:   A1S474
- GeneID:   4603225
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0973
- NMPDR:   fig|326297.7.peg.913
- eggNOG:   COG0274
- HOGENOM:   HBG636421
- OMA:   CKEACGD
- PhylomeDB:   A1S474
- ProtClustDB:   PRK05283
- GO:   GO:0005737
- HAMAP:   MF_00592
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 27361; Mature: 27229

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: ACT_SITE 166-166 ACT_SITE 198-198

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLKKAAQRAIELMDLTTLNDDDTAEKVIELCKKAVTPAGHTAAICIYPRFIPIARKTL
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH
IELDAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGDETVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCHHHHH
LVKACKEACGDDVLLKVIIESGELKDPALIRKASEISIDAGADFIKTSTGKVPVNATLEA
HHHHHHHHCCCHHEEHEEHHCCCCCCHHHHHHHHHCEECCCCCHHCCCCCCCCCCCHHHH
AEIMLTVIAEKNRAVGFKPAGGVRDAAAAAEFLGTAARILGEDWVTPRTFRFGASSLLSS
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHH
LLHTLELADAPKGAQGY
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SDLKKAAQRAIELMDLTTLNDDDTAEKVIELCKKAVTPAGHTAAICIYPRFIPIARKTL
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHH
IELDAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGDETVGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCHHHHH
LVKACKEACGDDVLLKVIIESGELKDPALIRKASEISIDAGADFIKTSTGKVPVNATLEA
HHHHHHHHCCCHHEEHEEHHCCCCCCHHHHHHHHHCEECCCCCHHCCCCCCCCCCCHHHH
AEIMLTVIAEKNRAVGFKPAGGVRDAAAAAEFLGTAARILGEDWVTPRTFRFGASSLLSS
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHH
LLHTLELADAPKGAQGY
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA