| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774084
Identifier: 119774084
GI number: 119774084
Start: 1146829
End: 1147965
Strand: Direct
Name: 119774084
Synonym: Sama_0947
Alternate gene names: NA
Gene position: 1146829-1147965 (Clockwise)
Preceding gene: 119774083
Following gene: 119774085
Centisome position: 26.63
GC content: 53.65
Gene sequence:
>1137_bases ATGCAAGCAACACAGACCAAGGCCGCTAAGCCGAGGTTAATGTCACTGGACGCCCTGAGGGGCTTTGACATGTTCTGGAT CTTGGGTGGGGAGAAGCTGTTTATTGCGCTCTTTGCCCTGACAGGATGGTCCTTCTGGCAGCTCGCCGATGCCGAGATGC ATCATAGTGAGTGGCATGGCTTTACTTTTTACGATTTGATTTTCCCTCTGTTTATTTTTCTCTCCGGTGTGGCGCTGGGA CTGTCGCCCAAACGGCTCGATAAACTGGCGCCAGCCGAGCGCAATCCAATTTATCGTCACGCGGTAAAGCGCTTGTTTTT GTTGCTGGCGTTGGGCGTGCTCTATAACCACGGCTGGGGAACGGGCATTCCGGCTCATTCAGACGAAGTACGTTATGCCA GCGTGCTGGGCCGCATTGCCTTTGCCTGGTTCTTTGCTGCGCTTTTGGTTTGGCATACCAGCCTGCGTACTCAGATAGCG ACCGCCCTGGCTATTTTGTTTGGGTACGCTGCCATTCAGCTGTGGTTGCCGGTTCCCGGAGGTCAGGCAGGTGTGTTGAC ACCAAGTGGCTCCATCAACGCCTGGGTAGACACCCATTTTCTGCCGGGGATCACCTATCAACACCGTCCCTACGATCCTG AAGGTATTCTTTCCACTCTGCCGGCAATAGTGAATGCGCTGATGGGCGTGTTTGTTGGTCGCTTTATTGTGAAGCCAGAC GCCAGGGGCGACTGGGCAAAGGCGGGAATTCTGACCGGGGCAGGGGGACTGTCGCTGGTGCTCGGTTGGAGTCTCGACTC GGTATTGCCGGTGAACAAAGATTTGTGGACCTCCAGCTTTGTATTGGTGACCACCGGCTGGAATTTGTTGTTCCTCGCTC TCTTTTATGTGCTGGTGGATGTGCTTGGTGCCAAGCGTCTGGCATTTCCGTTTGTGGTGATTGGGGTGAACTCCATCATT ATTTATCTGGCATCCAGCCTGATGAACTGGGAATACCTCAGTAAGAGCCTCTTTGGTGGAGTTATCCATGCCTTACCTAT GCCTGCCCAGGCGTTGGCGGCAGCCATCGGATTTTTGCTGGTACAGTGGGCCCTGCTTTATTGGATGTACCGTAAAGGCA TATTCATCCGGATTTAA
Upstream 100 bases:
>100_bases AGACGACTACCGGCCCTGGTGGAGTCAGCTCCTCCGGGGCCTGTTTTTATCTGTAAAAAACTGAAAGACTGAACAGATAA CAAAAATAAAGGATAGAAGC
Downstream 100 bases:
>100_bases TTCAAGGTTGTTAGCATGTTGGCGATCCGATGTGCATCTGGCAGCCCTGTTACATGTATTTTAATAAAATGACAGCGTTG TCTTTTTGGGCTTGGTGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MQATQTKAAKPRLMSLDALRGFDMFWILGGEKLFIALFALTGWSFWQLADAEMHHSEWHGFTFYDLIFPLFIFLSGVALG LSPKRLDKLAPAERNPIYRHAVKRLFLLLALGVLYNHGWGTGIPAHSDEVRYASVLGRIAFAWFFAALLVWHTSLRTQIA TALAILFGYAAIQLWLPVPGGQAGVLTPSGSINAWVDTHFLPGITYQHRPYDPEGILSTLPAIVNALMGVFVGRFIVKPD ARGDWAKAGILTGAGGLSLVLGWSLDSVLPVNKDLWTSSFVLVTTGWNLLFLALFYVLVDVLGAKRLAFPFVVIGVNSII IYLASSLMNWEYLSKSLFGGVIHALPMPAQALAAAIGFLLVQWALLYWMYRKGIFIRI
Sequences:
>Translated_378_residues MQATQTKAAKPRLMSLDALRGFDMFWILGGEKLFIALFALTGWSFWQLADAEMHHSEWHGFTFYDLIFPLFIFLSGVALG LSPKRLDKLAPAERNPIYRHAVKRLFLLLALGVLYNHGWGTGIPAHSDEVRYASVLGRIAFAWFFAALLVWHTSLRTQIA TALAILFGYAAIQLWLPVPGGQAGVLTPSGSINAWVDTHFLPGITYQHRPYDPEGILSTLPAIVNALMGVFVGRFIVKPD ARGDWAKAGILTGAGGLSLVLGWSLDSVLPVNKDLWTSSFVLVTTGWNLLFLALFYVLVDVLGAKRLAFPFVVIGVNSII IYLASSLMNWEYLSKSLFGGVIHALPMPAQALAAAIGFLLVQWALLYWMYRKGIFIRI >Mature_378_residues MQATQTKAAKPRLMSLDALRGFDMFWILGGEKLFIALFALTGWSFWQLADAEMHHSEWHGFTFYDLIFPLFIFLSGVALG LSPKRLDKLAPAERNPIYRHAVKRLFLLLALGVLYNHGWGTGIPAHSDEVRYASVLGRIAFAWFFAALLVWHTSLRTQIA TALAILFGYAAIQLWLPVPGGQAGVLTPSGSINAWVDTHFLPGITYQHRPYDPEGILSTLPAIVNALMGVFVGRFIVKPD ARGDWAKAGILTGAGGLSLVLGWSLDSVLPVNKDLWTSSFVLVTTGWNLLFLALFYVLVDVLGAKRLAFPFVVIGVNSII IYLASSLMNWEYLSKSLFGGVIHALPMPAQALAAAIGFLLVQWALLYWMYRKGIFIRI
Specific function: Unknown
COG id: COG4299
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI150378452, Length=424, Percent_Identity=26.1792452830189, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24639786, Length=376, Percent_Identity=24.7340425531915, Blast_Score=94, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41824; Mature: 41824
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQATQTKAAKPRLMSLDALRGFDMFWILGGEKLFIALFALTGWSFWQLADAEMHHSEWHG CCCCCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCHHHHHHCHHHHHHHCCC FTFYDLIFPLFIFLSGVALGLSPKRLDKLAPAERNPIYRHAVKRLFLLLALGVLYNHGWG CHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC TGIPAHSDEVRYASVLGRIAFAWFFAALLVWHTSLRTQIATALAILFGYAAIQLWLPVPG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC GQAGVLTPSGSINAWVDTHFLPGITYQHRPYDPEGILSTLPAIVNALMGVFVGRFIVKPD CCCEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC ARGDWAKAGILTGAGGLSLVLGWSLDSVLPVNKDLWTSSFVLVTTGWNLLFLALFYVLVD CCCCHHHHCEEECCCCHHEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH VLGAKRLAFPFVVIGVNSIIIYLASSLMNWEYLSKSLFGGVIHALPMPAQALAAAIGFLL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VQWALLYWMYRKGIFIRI HHHHHHHHHHHCCEEEEC >Mature Secondary Structure MQATQTKAAKPRLMSLDALRGFDMFWILGGEKLFIALFALTGWSFWQLADAEMHHSEWHG CCCCCCCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCHHHHHHCHHHHHHHCCC FTFYDLIFPLFIFLSGVALGLSPKRLDKLAPAERNPIYRHAVKRLFLLLALGVLYNHGWG CHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC TGIPAHSDEVRYASVLGRIAFAWFFAALLVWHTSLRTQIATALAILFGYAAIQLWLPVPG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC GQAGVLTPSGSINAWVDTHFLPGITYQHRPYDPEGILSTLPAIVNALMGVFVGRFIVKPD CCCEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC ARGDWAKAGILTGAGGLSLVLGWSLDSVLPVNKDLWTSSFVLVTTGWNLLFLALFYVLVD CCCCHHHHCEEECCCCHHEEEECCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH VLGAKRLAFPFVVIGVNSIIIYLASSLMNWEYLSKSLFGGVIHALPMPAQALAAAIGFLL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VQWALLYWMYRKGIFIRI HHHHHHHHHHHCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA