| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is gluP [H]
Identifier: 119774085
GI number: 119774085
Start: 1148200
End: 1149525
Strand: Direct
Name: gluP [H]
Synonym: Sama_0948
Alternate gene names: 119774085
Gene position: 1148200-1149525 (Clockwise)
Preceding gene: 119774084
Following gene: 119774086
Centisome position: 26.66
GC content: 52.79
Gene sequence:
>1326_bases ATGAACATGACAGTTGCGAGCGAGGCTCAGGTGAGCCGCAGAAGCAGCGTACTGCCGATGACCATTATCGGCATACTCTT CTTCATCTTTGGATTTGTGACCTGGCTGAATGGTTCACTGATCCCTTTTCTGAAGGTTATCTGTGAGCTGAACGAGTTTC AGGCACTGTTTGTCACTTTTGCCTTCTACATAGCCTACACGGTAATGGCCTTGCCTATGTCCTCCATTCTACGCCGTACC GGTTACCGTAATGGTATGGCCATTGGTTTGGGCATCATGGTGGTGGGTAGCCTGGCTTTTATTCCAGCCGCATACAGCGC CAACTTCCTGCTGTTTTTGGGTGCCCTGTTTATTCTGGGAACGGGTTTGACCATTCTGCAAACGGCATCCAACCCTTACG TGGTTCATATCGGTCCCAAAGAAAGTGCGGCCATGCGGATCTCCATCATGGGAATTATCAACAAGCTCGCTGGTGTAGTG GTTCCGCTGCTGTTTACTGCGTTGGTGTTGTCGGGGCTTGAAAACTTCGATGAAGCTCACCTGTCGGCATTGAGCGACGC AGACCGAGCGGTGCAGATAACCGAGCTCTCAAGCCGCCTGGTGATGCCTTATATCTATATGGCCGTGGCGCTGCTTGCGC TGATCGCGCTGGTGAAGTTCTCTGGTCTACCAGAACTTGAATTTGAAGAAGCCGAATCCGCCGAAGGCGAGAAGGGCAGT ATCACCCAGTTTCCTCAGGTTATTCTGGGCGCCATAGCACTCTTTGCTTATGTGGGTATCGAGGTGATTGCCGGCGATAC CATTGGTCTGTACGGTCAGTCGCTTGGGGTGGCCAATTTCGCGTCGCTTACTTCATACACCATGGTATTTATGGTGATTG GTTATGCCATAGGTGTGCTCTGTATTCCGCGTTTTATCAGTCAGGAAAGGGCGTTGCTTGCCTCCGCCATTGCTGGTGGT CTGTGTGTGCTTGGTGCTGTATTTGGTTCTACCGAAAGCACCACACTGGCCTCAGCCCTCTGGGGATGGATGGGGGTGCC TTTGGTCCCCAACTCGGTAGTTTTTGTTGCCATGATGGGCCTAGCCCACGCGCTGGTGTGGCCTGCCGTTTGGCCTTTGG CATTGGATGGCTTGGGCAAGTTTACCGCCCAGGGTTCGGCGTTGCTTATCATGGGGATTTCCGGTGGCGCCATTTTGCCC CTGCTCTTTGGCAAGGTGGCCCATTTCAGCGGTGAGACTCAGCTGGGTTACTGGGTAGGCCTGCCATGCTATCTGTTCAT CCTCTTCTATGCGGTGAAAGGACATAAGATGCGTAGCTGGAAATAA
Upstream 100 bases:
>100_bases CAGATTGGCACAATGGTGCGGTGATATAACGAGTGCCGTTGGATGGATGGGATTGGGCTTACCCTGATCTTGATAAGAAA CTATTAAAAGAAGCAGGCAT
Downstream 100 bases:
>100_bases CCGCGGGTATCTGAAATATTGTCGGTTAAAAGGAGGCTAAGGCCTCCTTTTTGATGGGCGAGTTTTCCCCTTAAGCTGAT AAGTGTCTGAGTTTGGGTGC
Product: multiple antibiotic resistance (MarC)-like protein
Products: Proton [Cytoplasm]; L-fucose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MNMTVASEAQVSRRSSVLPMTIIGILFFIFGFVTWLNGSLIPFLKVICELNEFQALFVTFAFYIAYTVMALPMSSILRRT GYRNGMAIGLGIMVVGSLAFIPAAYSANFLLFLGALFILGTGLTILQTASNPYVVHIGPKESAAMRISIMGIINKLAGVV VPLLFTALVLSGLENFDEAHLSALSDADRAVQITELSSRLVMPYIYMAVALLALIALVKFSGLPELEFEEAESAEGEKGS ITQFPQVILGAIALFAYVGIEVIAGDTIGLYGQSLGVANFASLTSYTMVFMVIGYAIGVLCIPRFISQERALLASAIAGG LCVLGAVFGSTESTTLASALWGWMGVPLVPNSVVFVAMMGLAHALVWPAVWPLALDGLGKFTAQGSALLIMGISGGAILP LLFGKVAHFSGETQLGYWVGLPCYLFILFYAVKGHKMRSWK
Sequences:
>Translated_441_residues MNMTVASEAQVSRRSSVLPMTIIGILFFIFGFVTWLNGSLIPFLKVICELNEFQALFVTFAFYIAYTVMALPMSSILRRT GYRNGMAIGLGIMVVGSLAFIPAAYSANFLLFLGALFILGTGLTILQTASNPYVVHIGPKESAAMRISIMGIINKLAGVV VPLLFTALVLSGLENFDEAHLSALSDADRAVQITELSSRLVMPYIYMAVALLALIALVKFSGLPELEFEEAESAEGEKGS ITQFPQVILGAIALFAYVGIEVIAGDTIGLYGQSLGVANFASLTSYTMVFMVIGYAIGVLCIPRFISQERALLASAIAGG LCVLGAVFGSTESTTLASALWGWMGVPLVPNSVVFVAMMGLAHALVWPAVWPLALDGLGKFTAQGSALLIMGISGGAILP LLFGKVAHFSGETQLGYWVGLPCYLFILFYAVKGHKMRSWK >Mature_441_residues MNMTVASEAQVSRRSSVLPMTIIGILFFIFGFVTWLNGSLIPFLKVICELNEFQALFVTFAFYIAYTVMALPMSSILRRT GYRNGMAIGLGIMVVGSLAFIPAAYSANFLLFLGALFILGTGLTILQTASNPYVVHIGPKESAAMRISIMGIINKLAGVV VPLLFTALVLSGLENFDEAHLSALSDADRAVQITELSSRLVMPYIYMAVALLALIALVKFSGLPELEFEEAESAEGEKGS ITQFPQVILGAIALFAYVGIEVIAGDTIGLYGQSLGVANFASLTSYTMVFMVIGYAIGVLCIPRFISQERALLASAIAGG LCVLGAVFGSTESTTLASALWGWMGVPLVPNSVVFVAMMGLAHALVWPAVWPLALDGLGKFTAQGSALLIMGISGGAILP LLFGKVAHFSGETQLGYWVGLPCYLFILFYAVKGHKMRSWK
Specific function: Intake of glucose and galactose (Potential) [H]
COG id: COG0738
COG function: function code G; Fucose permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. FHS transporter (TC 2.A.1.7) family [H]
Homologues:
Organism=Escherichia coli, GI1789166, Length=429, Percent_Identity=26.5734265734266, Blast_Score=130, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005964 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 47082; Mature: 47082
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMTVASEAQVSRRSSVLPMTIIGILFFIFGFVTWLNGSLIPFLKVICELNEFQALFVTF CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH AFYIAYTVMALPMSSILRRTGYRNGMAIGLGIMVVGSLAFIPAAYSANFLLFLGALFILG HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH TGLTILQTASNPYVVHIGPKESAAMRISIMGIINKLAGVVVPLLFTALVLSGLENFDEAH CCHHEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSALSDADRAVQITELSSRLVMPYIYMAVALLALIALVKFSGLPELEFEEAESAEGEKGS HHHHHCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC ITQFPQVILGAIALFAYVGIEVIAGDTIGLYGQSLGVANFASLTSYTMVFMVIGYAIGVL HHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CIPRFISQERALLASAIAGGLCVLGAVFGSTESTTLASALWGWMGVPLVPNSVVFVAMMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH LAHALVWPAVWPLALDGLGKFTAQGSALLIMGISGGAILPLLFGKVAHFSGETQLGYWVG HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHH LPCYLFILFYAVKGHKMRSWK HHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MNMTVASEAQVSRRSSVLPMTIIGILFFIFGFVTWLNGSLIPFLKVICELNEFQALFVTF CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH AFYIAYTVMALPMSSILRRTGYRNGMAIGLGIMVVGSLAFIPAAYSANFLLFLGALFILG HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH TGLTILQTASNPYVVHIGPKESAAMRISIMGIINKLAGVVVPLLFTALVLSGLENFDEAH CCHHEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSALSDADRAVQITELSSRLVMPYIYMAVALLALIALVKFSGLPELEFEEAESAEGEKGS HHHHHCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC ITQFPQVILGAIALFAYVGIEVIAGDTIGLYGQSLGVANFASLTSYTMVFMVIGYAIGVL HHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CIPRFISQERALLASAIAGGLCVLGAVFGSTESTTLASALWGWMGVPLVPNSVVFVAMMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH LAHALVWPAVWPLALDGLGKFTAQGSALLIMGISGGAILPLLFGKVAHFSGETQLGYWVG HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHH LPCYLFILFYAVKGHKMRSWK HHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-fucose [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-fucose [Periplasm] = Proton [Cytoplasm] + L-fucose [Cytoplasm] [C]
General reaction: Permease [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9168605 [H]