| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hex [H]
Identifier: 119774080
GI number: 119774080
Start: 1140745
End: 1143399
Strand: Direct
Name: hex [H]
Synonym: Sama_0943
Alternate gene names: 119774080
Gene position: 1140745-1143399 (Clockwise)
Preceding gene: 119774079
Following gene: 119774081
Centisome position: 26.49
GC content: 56.5
Gene sequence:
>2655_bases ATGAAATTTTCCTTAGCCGCATCTGCGATTTTTCTCGCCTTGGGTGTCAGTGGGTGCTCACAAGCCCCGGTCGAGCCCGC TGCCGTAGCCGCTGAGCCTTCGGTGTTAACCCAGGCCAGTTTACAGGCCTTCGCCGATGGGCTGGACGTGAAATACCGGG TGGTAACCAACAGACCCGATGAACAGTGCAAAAAAGACGCCGGTGAAGGCCGCTGCTTTCAGGCCGAAATTGTGCTGACA TCGCCCATCGACTTCGACGGTCGCGATTTTGAAATCTATTACAGCCAGATGCGCCCGGTGCAGTCGGTGCAAAGCACAGA CTTTGTGATTGAGCATGTTAAAGGCGATTTGCATCGCATCAAGCCAACCGGGAATTTCGGCGGATTCAAGGCCAACCAGA GCCAGACCCTGGCGTTTCGCGGCGAGCTGTGGCAGCTGTCCGAAACCGATGCCATGCCCAACTACTACATTACAGCGCCG GGGCTTAAGCCTGTGGTAATTGCCAGTACCAGGCTGGCGGTCGAGGCTGAAACCGGTCTTGAGCTGCGCCCTTACGTCGA AGCCTTTACCGATGCCGACAAGCAGTATCGTCGTACCGATAACGACAAACTGCCATGGGCAACGGCGCCAGTGCTGTTTG AGGCGAATCAGTCGCTTGTAGTTGACCCTGCCGCGGCGGCCCAGCGCATAGTGCCTGCGCCTGTGTCGCAAACATTTGAA GCGGGTCTTGGCACGCTGGACTTGTCCGGCGGTATTGCCGTTGAACTGCCACAGGGGCTGGATAAAGCCGCCATCGACGC TGCGCTGGCACGTCTTGCCCGCCTGGGTATTGAGGAGGACTCATCTGGTGCCAGGATTAAGCTGGTAAGTGATGACTCAC TTGGTGCAGAAGCCTATCAGCTGGTTATTCGCCCAGAGGGCGCCGAGATTAAAGCCGCCACCGATGCCGGCTTTGCCTAT GGTCTGTCGTCACTGGCAGCGCTTGTGCAGCCAGGCAAGCCAGCTATCAGTGCGCAAACCATCACTGATGCACCAAGATA CGGCTTTCGCGGCATGCACGTGGATGTGTCCCGCAACTTCCACTCCAAGGCGTTTATGCTAAGCCTGCTTGACCAGATGG CGGCCTATAAACTTAACAAGCTGCACCTGCACATGGGCGATGATGAAGGCTGGCGCCTCGAAATTGATGGTTTGCCGGAG CTGACCGAGATAGGCAGCAAACGTTGTCACGACCTTGCCGAAGATACCTGCCTGCTGCCGCAGCTTGGCAGTGGGCCTGA TGCCGATGTGAAGGTAAACGGGTTCTACAGCAAGGCCGACTATATTGAGATCCTGAAATATGCCTCAGCCAGACAAATTC AGGTGATCCCGTCCATGGACATGCCCGGCCACAGCCGCGCTGCCGTGAAAGCCATGGAAGTCAGATACCGCCGCCTGGCG GAAGTGGGTGATATCAAGGGCGCTGAAGAATATCGCCTTATCGATCCGGAAGATAAGACGGTTTACAGTTCTATTCAGTA CTACGACGACAACACCCTCAACGTGTGCATCGAGTCGACTTACCACTTTGTTGACAAGGTAATCGACGAAATTGCCAAAC TGCATAAAGAAGCCGGACAGCCGCTGACCCGTTATCACATTGGCGCCGATGAAACCGCCGGTGCCTGGCTTGAGTCGCCA AAGTGCGAAGCCTTTGTTGCAAATAACGACAAGGGAGTGACCAACAAGAGTGAGCTGGGTGCTTACTTTATCGAGCGGGT GGCCAACGTGCTGCATGACAAGGGCATTGAGCCAGCCGGTTGGAGTGATGGCATGAGCCACACCCGCCCGGAAAAAATGC CTGCCATGAACCAGAGCAACATCTGGGATGTGGTTGCTCACAAAGGTCATCAGCGTGCCCACAAGCAGGCTAACCTCGGC TGGGAAATCGTGCTGTCTAACCCTGAGGTGCTGTATTTCGATTTCCCGTACGAGGCCGATCCGAAGGAGCATGGCTACTA CTGGGCGAGCCGCGCCACCAACAGCCAAAAGGTTTTCGGCTTTATGCCGGGTAACCTGCCGGCCAATGCCGAGCAGTGGC TGGATATTGAGAACAATCCCTTCGAAGCCGACGACACAAAGCAGCAGGATGAGGCGGGCAAGGTTCTCAGCGAGCCTATG CAGCCTGGTAAGGCCTTCTATGGCGTGCAGGGCCAGCTGTGGAGCGAGACCATTCGCAGTGACGAGCAGGCACAGTACAT GATTTTCCCCCGCCTGCTGATGTTGGCGGAGCGTGCCTGGCACAAGCCGGGTTGGGAAGTACCCTACAACCATGAAGGCG CGCTCTATAACCAGAGCAGTGGCAGTTTCAGCGCCGAAGCCCGTGCGCTGCAGGCCGCAGATTGGCAGCAGATGGCCAAC ACCCTTGGCCATAAAGAGCTGGCCAAGCTGGATTTGGCCGGTGTGCACTACCGTGTCCCCACAGTCGGTGCCCGTATTGA GGATGGTAAGTTGTCGGCCAATATCGCTTTTCCCGGCCTTGGCATCGAATACCGTGAAGCCGATGGCAACTGGCAGCCTT ATCTGGCGCCGGTAGTGGTAACCAAGTTACCGGTTGAAGTGCGAGGTATTGCCGCAGACGGTAAGCGTAAGGGCAGAACC CTGAAGGTGAAATAA
Upstream 100 bases:
>100_bases CAGTCCGGTGAGCGCCTGTTCCAACAGGGGGAAAGATTGCGGGCACTTGTAAACTCATTCAGGTTGTAGCCCTGAAAAAA CAGGAAAAATGAGGACAACA
Downstream 100 bases:
>100_bases CCTCGATATAACAAAAGAGGCCTGATTTCAAAGTGAAAAACCGGGCCTCTTTTTCTCTGCTCAGGCCAGTGTTTCCGGGC ATGAACGCTGATTTTCAATC
Product: Beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Chitobiase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MKFSLAASAIFLALGVSGCSQAPVEPAAVAAEPSVLTQASLQAFADGLDVKYRVVTNRPDEQCKKDAGEGRCFQAEIVLT SPIDFDGRDFEIYYSQMRPVQSVQSTDFVIEHVKGDLHRIKPTGNFGGFKANQSQTLAFRGELWQLSETDAMPNYYITAP GLKPVVIASTRLAVEAETGLELRPYVEAFTDADKQYRRTDNDKLPWATAPVLFEANQSLVVDPAAAAQRIVPAPVSQTFE AGLGTLDLSGGIAVELPQGLDKAAIDAALARLARLGIEEDSSGARIKLVSDDSLGAEAYQLVIRPEGAEIKAATDAGFAY GLSSLAALVQPGKPAISAQTITDAPRYGFRGMHVDVSRNFHSKAFMLSLLDQMAAYKLNKLHLHMGDDEGWRLEIDGLPE LTEIGSKRCHDLAEDTCLLPQLGSGPDADVKVNGFYSKADYIEILKYASARQIQVIPSMDMPGHSRAAVKAMEVRYRRLA EVGDIKGAEEYRLIDPEDKTVYSSIQYYDDNTLNVCIESTYHFVDKVIDEIAKLHKEAGQPLTRYHIGADETAGAWLESP KCEAFVANNDKGVTNKSELGAYFIERVANVLHDKGIEPAGWSDGMSHTRPEKMPAMNQSNIWDVVAHKGHQRAHKQANLG WEIVLSNPEVLYFDFPYEADPKEHGYYWASRATNSQKVFGFMPGNLPANAEQWLDIENNPFEADDTKQQDEAGKVLSEPM QPGKAFYGVQGQLWSETIRSDEQAQYMIFPRLLMLAERAWHKPGWEVPYNHEGALYNQSSGSFSAEARALQAADWQQMAN TLGHKELAKLDLAGVHYRVPTVGARIEDGKLSANIAFPGLGIEYREADGNWQPYLAPVVVTKLPVEVRGIAADGKRKGRT LKVK
Sequences:
>Translated_884_residues MKFSLAASAIFLALGVSGCSQAPVEPAAVAAEPSVLTQASLQAFADGLDVKYRVVTNRPDEQCKKDAGEGRCFQAEIVLT SPIDFDGRDFEIYYSQMRPVQSVQSTDFVIEHVKGDLHRIKPTGNFGGFKANQSQTLAFRGELWQLSETDAMPNYYITAP GLKPVVIASTRLAVEAETGLELRPYVEAFTDADKQYRRTDNDKLPWATAPVLFEANQSLVVDPAAAAQRIVPAPVSQTFE AGLGTLDLSGGIAVELPQGLDKAAIDAALARLARLGIEEDSSGARIKLVSDDSLGAEAYQLVIRPEGAEIKAATDAGFAY GLSSLAALVQPGKPAISAQTITDAPRYGFRGMHVDVSRNFHSKAFMLSLLDQMAAYKLNKLHLHMGDDEGWRLEIDGLPE LTEIGSKRCHDLAEDTCLLPQLGSGPDADVKVNGFYSKADYIEILKYASARQIQVIPSMDMPGHSRAAVKAMEVRYRRLA EVGDIKGAEEYRLIDPEDKTVYSSIQYYDDNTLNVCIESTYHFVDKVIDEIAKLHKEAGQPLTRYHIGADETAGAWLESP KCEAFVANNDKGVTNKSELGAYFIERVANVLHDKGIEPAGWSDGMSHTRPEKMPAMNQSNIWDVVAHKGHQRAHKQANLG WEIVLSNPEVLYFDFPYEADPKEHGYYWASRATNSQKVFGFMPGNLPANAEQWLDIENNPFEADDTKQQDEAGKVLSEPM QPGKAFYGVQGQLWSETIRSDEQAQYMIFPRLLMLAERAWHKPGWEVPYNHEGALYNQSSGSFSAEARALQAADWQQMAN TLGHKELAKLDLAGVHYRVPTVGARIEDGKLSANIAFPGLGIEYREADGNWQPYLAPVVVTKLPVEVRGIAADGKRKGRT LKVK >Mature_884_residues MKFSLAASAIFLALGVSGCSQAPVEPAAVAAEPSVLTQASLQAFADGLDVKYRVVTNRPDEQCKKDAGEGRCFQAEIVLT SPIDFDGRDFEIYYSQMRPVQSVQSTDFVIEHVKGDLHRIKPTGNFGGFKANQSQTLAFRGELWQLSETDAMPNYYITAP GLKPVVIASTRLAVEAETGLELRPYVEAFTDADKQYRRTDNDKLPWATAPVLFEANQSLVVDPAAAAQRIVPAPVSQTFE AGLGTLDLSGGIAVELPQGLDKAAIDAALARLARLGIEEDSSGARIKLVSDDSLGAEAYQLVIRPEGAEIKAATDAGFAY GLSSLAALVQPGKPAISAQTITDAPRYGFRGMHVDVSRNFHSKAFMLSLLDQMAAYKLNKLHLHMGDDEGWRLEIDGLPE LTEIGSKRCHDLAEDTCLLPQLGSGPDADVKVNGFYSKADYIEILKYASARQIQVIPSMDMPGHSRAAVKAMEVRYRRLA EVGDIKGAEEYRLIDPEDKTVYSSIQYYDDNTLNVCIESTYHFVDKVIDEIAKLHKEAGQPLTRYHIGADETAGAWLESP KCEAFVANNDKGVTNKSELGAYFIERVANVLHDKGIEPAGWSDGMSHTRPEKMPAMNQSNIWDVVAHKGHQRAHKQANLG WEIVLSNPEVLYFDFPYEADPKEHGYYWASRATNSQKVFGFMPGNLPANAEQWLDIENNPFEADDTKQQDEAGKVLSEPM QPGKAFYGVQGQLWSETIRSDEQAQYMIFPRLLMLAERAWHKPGWEVPYNHEGALYNQSSGSFSAEARALQAADWQQMAN TLGHKELAKLDLAGVHYRVPTVGARIEDGKLSANIAFPGLGIEYREADGNWQPYLAPVVVTKLPVEVRGIAADGKRKGRT LKVK
Specific function: Hydrolysis of terminal, non-reducing N-acetyl-beta-D- glucosamine residues in chitobiose and higher analogs, and in glycoproteins [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=300, Percent_Identity=26, Blast_Score=98, Evalue=4e-20, Organism=Homo sapiens, GI189181666, Length=312, Percent_Identity=24.6794871794872, Blast_Score=79, Evalue=2e-14, Organism=Drosophila melanogaster, GI24657468, Length=517, Percent_Identity=23.0174081237911, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI17647501, Length=517, Percent_Identity=23.0174081237911, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI281365639, Length=522, Percent_Identity=22.7969348659004, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI24657474, Length=522, Percent_Identity=22.7969348659004, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI17933586, Length=177, Percent_Identity=30.5084745762712, Blast_Score=81, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 97245; Mature: 97245
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSLAASAIFLALGVSGCSQAPVEPAAVAAEPSVLTQASLQAFADGLDVKYRVVTNRPD CCCHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCH EQCKKDAGEGRCFQAEIVLTSPIDFDGRDFEIYYSQMRPVQSVQSTDFVIEHVKGDLHRI HHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE KPTGNFGGFKANQSQTLAFRGELWQLSETDAMPNYYITAPGLKPVVIASTRLAVEAETGL CCCCCCCCEECCCCCEEEEECCEEECCCCCCCCCEEEECCCCCEEEEEEEEEEEEECCCC ELRPYVEAFTDADKQYRRTDNDKLPWATAPVLFEANQSLVVDPAAAAQRIVPAPVSQTFE CCHHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEECCCCEEECCHHHHHCCCCCCHHHHHH AGLGTLDLSGGIAVELPQGLDKAAIDAALARLARLGIEEDSSGARIKLVSDDSLGAEAYQ CCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEE LVIRPEGAEIKAATDAGFAYGLSSLAALVQPGKPAISAQTITDAPRYGFRGMHVDVSRNF EEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCC HSKAFMLSLLDQMAAYKLNKLHLHMGDDEGWRLEIDGLPELTEIGSKRCHDLAEDTCLLP CHHHHHHHHHHHHHHHEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCEECC QLGSGPDADVKVNGFYSKADYIEILKYASARQIQVIPSMDMPGHSRAAVKAMEVRYRRLA CCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH EVGDIKGAEEYRLIDPEDKTVYSSIQYYDDNTLNVCIESTYHFVDKVIDEIAKLHKEAGQ HHHCCCCCCCEEEECCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC PLTRYHIGADETAGAWLESPKCEAFVANNDKGVTNKSELGAYFIERVANVLHDKGIEPAG CEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC WSDGMSHTRPEKMPAMNQSNIWDVVAHKGHQRAHKQANLGWEIVLSNPEVLYFDFPYEAD CCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCEEEEECCCCEEEEECCCCCC PKEHGYYWASRATNSQKVFGFMPGNLPANAEQWLDIENNPFEADDTKQQDEAGKVLSEPM CCCCCEEEEECCCCCCEEEEEECCCCCCCHHHCEECCCCCCCCCCCCCHHHHHHHHHCCC QPGKAFYGVQGQLWSETIRSDEQAQYMIFPRLLMLAERAWHKPGWEVPYNHEGALYNQSS CCCCEEECCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC GSFSAEARALQAADWQQMANTLGHKELAKLDLAGVHYRVPTVGARIEDGKLSANIAFPGL CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCCCCEEECCCEEEEEECCCC GIEYREADGNWQPYLAPVVVTKLPVEVRGIAADGKRKGRTLKVK CEEEEECCCCCCCEEHEEEEEECCEEEEEEECCCCCCCCEEEEC >Mature Secondary Structure MKFSLAASAIFLALGVSGCSQAPVEPAAVAAEPSVLTQASLQAFADGLDVKYRVVTNRPD CCCHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCH EQCKKDAGEGRCFQAEIVLTSPIDFDGRDFEIYYSQMRPVQSVQSTDFVIEHVKGDLHRI HHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEE KPTGNFGGFKANQSQTLAFRGELWQLSETDAMPNYYITAPGLKPVVIASTRLAVEAETGL CCCCCCCCEECCCCCEEEEECCEEECCCCCCCCCEEEECCCCCEEEEEEEEEEEEECCCC ELRPYVEAFTDADKQYRRTDNDKLPWATAPVLFEANQSLVVDPAAAAQRIVPAPVSQTFE CCHHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEECCCCEEECCHHHHHCCCCCCHHHHHH AGLGTLDLSGGIAVELPQGLDKAAIDAALARLARLGIEEDSSGARIKLVSDDSLGAEAYQ CCCCEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEE LVIRPEGAEIKAATDAGFAYGLSSLAALVQPGKPAISAQTITDAPRYGFRGMHVDVSRNF EEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCC HSKAFMLSLLDQMAAYKLNKLHLHMGDDEGWRLEIDGLPELTEIGSKRCHDLAEDTCLLP CHHHHHHHHHHHHHHHEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCEECC QLGSGPDADVKVNGFYSKADYIEILKYASARQIQVIPSMDMPGHSRAAVKAMEVRYRRLA CCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH EVGDIKGAEEYRLIDPEDKTVYSSIQYYDDNTLNVCIESTYHFVDKVIDEIAKLHKEAGQ HHHCCCCCCCEEEECCCCCCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC PLTRYHIGADETAGAWLESPKCEAFVANNDKGVTNKSELGAYFIERVANVLHDKGIEPAG CEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC WSDGMSHTRPEKMPAMNQSNIWDVVAHKGHQRAHKQANLGWEIVLSNPEVLYFDFPYEAD CCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCEEEEECCCCEEEEECCCCCC PKEHGYYWASRATNSQKVFGFMPGNLPANAEQWLDIENNPFEADDTKQQDEAGKVLSEPM CCCCCEEEEECCCCCCEEEEEECCCCCCCHHHCEECCCCCCCCCCCCCHHHHHHHHHCCC QPGKAFYGVQGQLWSETIRSDEQAQYMIFPRLLMLAERAWHKPGWEVPYNHEGALYNQSS CCCCEEECCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC GSFSAEARALQAADWQQMANTLGHKELAKLDLAGVHYRVPTVGARIEDGKLSANIAFPGL CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCCCCEEECCCEEEEEECCCC GIEYREADGNWQPYLAPVVVTKLPVEVRGIAADGKRKGRTLKVK CEEEEECCCCCCCEEHEEEEEECCEEEEEEECCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8341694 [H]