| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774034
Identifier: 119774034
GI number: 119774034
Start: 1085678
End: 1086052
Strand: Direct
Name: 119774034
Synonym: Sama_0897
Alternate gene names: NA
Gene position: 1085678-1086052 (Clockwise)
Preceding gene: 119774033
Following gene: 119774037
Centisome position: 25.21
GC content: 52.27
Gene sequence:
>375_bases ATGGCCCAACTGAGCTTGCCCAACGCCACTGCCCAGGACACCAGCCTTATTCATTTGCAATATGGGATGATGAGTGCATT CCCTCTGGTGCTTCCTGTGCTCTTTGCTCTGGCGCTGAATCTGTCACTGCGCAAGAGCGATAGCTGCAGCATTTGCGACA CGCATCTTAAGTGGCAACGCAACTCAATGTTTGGGTTAGTCTTCGCTTCCCTTGCCTGGTATTGGATACCCACAGGCTGG ATGACTTCAGCAGCGCTGGTAGTGGTGCTTGCCTGGTTTGTGCTGCGAATCGTTAAAGGGTGGGTCAGCCTGATTGACGG GGTGGCTATTCAACCTGTGCAGCATTCTGACGAAGCGATTGATAGCTTGAAGTAA
Upstream 100 bases:
>100_bases CGCTTTTGCCGATGGGAAAGTAAGGTTAAATCAGGGCCGTGATCACAGTTTTGAAATCGGTTCGATTTACCGTTTCTCGT CAGCCTTACCGGAGTGCATT
Downstream 100 bases:
>100_bases GGGCATTGCGCTATCCGGTTAATCAAAAGGGGGCCTGTTGGCCCCTTTTGCATTACGACTCTACTATCCTTTACACAAAA AACTGCCGCAAAGTTTCACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MAQLSLPNATAQDTSLIHLQYGMMSAFPLVLPVLFALALNLSLRKSDSCSICDTHLKWQRNSMFGLVFASLAWYWIPTGW MTSAALVVVLAWFVLRIVKGWVSLIDGVAIQPVQHSDEAIDSLK
Sequences:
>Translated_124_residues MAQLSLPNATAQDTSLIHLQYGMMSAFPLVLPVLFALALNLSLRKSDSCSICDTHLKWQRNSMFGLVFASLAWYWIPTGW MTSAALVVVLAWFVLRIVKGWVSLIDGVAIQPVQHSDEAIDSLK >Mature_123_residues AQLSLPNATAQDTSLIHLQYGMMSAFPLVLPVLFALALNLSLRKSDSCSICDTHLKWQRNSMFGLVFASLAWYWIPTGWM TSAALVVVLAWFVLRIVKGWVSLIDGVAIQPVQHSDEAIDSLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13748; Mature: 13617
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLSLPNATAQDTSLIHLQYGMMSAFPLVLPVLFALALNLSLRKSDSCSICDTHLKWQR CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH NSMFGLVFASLAWYWIPTGWMTSAALVVVLAWFVLRIVKGWVSLIDGVAIQPVQHSDEAI CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH DSLK HCCC >Mature Secondary Structure AQLSLPNATAQDTSLIHLQYGMMSAFPLVLPVLFALALNLSLRKSDSCSICDTHLKWQR CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH NSMFGLVFASLAWYWIPTGWMTSAALVVVLAWFVLRIVKGWVSLIDGVAIQPVQHSDEAI CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH DSLK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA