Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773955

Identifier: 119773955

GI number: 119773955

Start: 1002432

End: 1002983

Strand: Direct

Name: 119773955

Synonym: Sama_0818

Alternate gene names: NA

Gene position: 1002432-1002983 (Clockwise)

Preceding gene: 119773954

Following gene: 119773956

Centisome position: 23.28

GC content: 53.08

Gene sequence:

>552_bases
ATGGCGATAACATCAGCAAGCAAAGCATTGAAAAGGCTGTCAGGTGCGCTACTGCTGGTTGCACTCGGTTCCTTTACGGG
AGCCGCCATCAGTGCGGATAACCCACTCGATGGCATGCACCGTGTGGGCAAAGGCAAAATGAATTGGCTGTGGCTTGAGC
TTTACCATGCCAGCCTTTTTACGGTCGATGGTCAATACCAGCACGGGCGCTATCCTCAGGCACTGGAAATTCAGTACTCG
CGGGATATCGAAGCCAAAGACTTGCTGGATGCCACTGGCAGCGAATGGCAAAAGCAGGGTTTGAATGAGGCCCAGGTGAA
AGCGTTTTTGGCTAAACTCGCCCCCCTGTGGGTGGATGTGCAGCGGGGCGATACCCTGCTGCTGGTGGCAAGCGATGAAA
GCCATGGCGAATTTTTCCATAACGGCCAATCCCTTGGCAAAGTGAATGATACAGGTTTGATGCAAGCCTTTTTGGGAATT
TGGCTTAGAGACGACACCAGTGAACCCACCCTCAGGGCACAGCTTTTGGGAGAAACCTCATGCGACTGCTAG

Upstream 100 bases:

>100_bases
ATCTGCTCACCTTCCTGCTTATCGCGCCCCTCTGGGGGACGATTATTCCCGGCTTCTTTTGGCTGCAGCAAAGGCTGCCA
GGCAACGGAGACTACCTATC

Downstream 100 bases:

>100_bases
CGTTACTACTTTGTGCAACACTGCTTTGGGGCTGCGAGAGTGCCGATATTGACGATTATCGCGGCGCAAGTAACGAACTG
AAGCTGGATACATTTTTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MAITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLFTVDGQYQHGRYPQALEIQYS
RDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDVQRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGI
WLRDDTSEPTLRAQLLGETSCDC

Sequences:

>Translated_183_residues
MAITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLFTVDGQYQHGRYPQALEIQYS
RDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDVQRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGI
WLRDDTSEPTLRAQLLGETSCDC
>Mature_182_residues
AITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLFTVDGQYQHGRYPQALEIQYSR
DIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDVQRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGIW
LRDDTSEPTLRAQLLGETSCDC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20065; Mature: 19934

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLF
CCCCHHHHHHHHHHHHEEEEEHHCCCCCEEECCCCHHHHHHHCCCCCCEEEEEEEEEEEE
TVDGQYQHGRYPQALEIQYSRDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDV
EECCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHEEEE
QRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGIWLRDDTSEPTLRAQLLGETS
ECCCEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHECCCCC
CDC
CCC
>Mature Secondary Structure 
AITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLF
CCCHHHHHHHHHHHHEEEEEHHCCCCCEEECCCCHHHHHHHCCCCCCEEEEEEEEEEEE
TVDGQYQHGRYPQALEIQYSRDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDV
EECCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHEEEE
QRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGIWLRDDTSEPTLRAQLLGETS
ECCCEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHECCCCC
CDC
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]