| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773954
Identifier: 119773954
GI number: 119773954
Start: 1001932
End: 1002441
Strand: Direct
Name: 119773954
Synonym: Sama_0817
Alternate gene names: NA
Gene position: 1001932-1002441 (Clockwise)
Preceding gene: 119773953
Following gene: 119773955
Centisome position: 23.27
GC content: 57.06
Gene sequence:
>510_bases ATGTCCCAGCGATGGTTTTTGCTTGTCAGCGCCGCTGTGTACACTGCCGCCTGGTGGCTTGCAGTGCTTTGGCAAGGCGA GGGACTGATTTGGCTGTGTCTGCTACTGCTGGTGCATTTTGCCTTAAGTCCAACGCGGCTTAAGGATTTCCGGCTGCTGC CACTGGCACTTATCGGCATGACCATGGACACCCTGCTCATGTACGCAGGGGTGTATGAGTTCAGCGCCATGCCAGTGTGG CTTATGTTGCTGTGGCTGCATTTTTTACTCGCCATGGGCCATTGCATCGCCTGGCTTGGCAAGCAACCCATCTGGGTGCA GGTATTTACCGGTGTGTTCGGCGGTGCAGGCAGCTACATTGCCGGGGCAGAGCTTGGTGCCGTGGCGATGCCCCTTGGCA ATCTGCTCACCTTCCTGCTTATCGCGCCCCTCTGGGGGACGATTATTCCCGGCTTCTTTTGGCTGCAGCAAAGGCTGCCA GGCAACGGAGACTACCTATCATGGCGATAA
Upstream 100 bases:
>100_bases CTGAGCTACTGCGAGGGTGGCTTCTGGGAGCGCACCACCAGTGCTGTGCATTTGGTTGCCGCAAGACCGGGCTGGCGCCC TTAGACATTCCGGAGCCCCT
Downstream 100 bases:
>100_bases CATCAGCAAGCAAAGCATTGAAAAGGCTGTCAGGTGCGCTACTGCTGGTTGCACTCGGTTCCTTTACGGGAGCCGCCATC AGTGCGGATAACCCACTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MSQRWFLLVSAAVYTAAWWLAVLWQGEGLIWLCLLLLVHFALSPTRLKDFRLLPLALIGMTMDTLLMYAGVYEFSAMPVW LMLLWLHFLLAMGHCIAWLGKQPIWVQVFTGVFGGAGSYIAGAELGAVAMPLGNLLTFLLIAPLWGTIIPGFFWLQQRLP GNGDYLSWR
Sequences:
>Translated_169_residues MSQRWFLLVSAAVYTAAWWLAVLWQGEGLIWLCLLLLVHFALSPTRLKDFRLLPLALIGMTMDTLLMYAGVYEFSAMPVW LMLLWLHFLLAMGHCIAWLGKQPIWVQVFTGVFGGAGSYIAGAELGAVAMPLGNLLTFLLIAPLWGTIIPGFFWLQQRLP GNGDYLSWR >Mature_168_residues SQRWFLLVSAAVYTAAWWLAVLWQGEGLIWLCLLLLVHFALSPTRLKDFRLLPLALIGMTMDTLLMYAGVYEFSAMPVWL MLLWLHFLLAMGHCIAWLGKQPIWVQVFTGVFGGAGSYIAGAELGAVAMPLGNLLTFLLIAPLWGTIIPGFFWLQQRLPG NGDYLSWR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19017; Mature: 18886
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRWFLLVSAAVYTAAWWLAVLWQGEGLIWLCLLLLVHFALSPTRLKDFRLLPLALIGM CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TMDTLLMYAGVYEFSAMPVWLMLLWLHFLLAMGHCIAWLGKQPIWVQVFTGVFGGAGSYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHH AGAELGAVAMPLGNLLTFLLIAPLWGTIIPGFFWLQQRLPGNGDYLSWR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SQRWFLLVSAAVYTAAWWLAVLWQGEGLIWLCLLLLVHFALSPTRLKDFRLLPLALIGM CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TMDTLLMYAGVYEFSAMPVWLMLLWLHFLLAMGHCIAWLGKQPIWVQVFTGVFGGAGSYI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHH AGAELGAVAMPLGNLLTFLLIAPLWGTIIPGFFWLQQRLPGNGDYLSWR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA