| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773951
Identifier: 119773951
GI number: 119773951
Start: 998630
End: 999892
Strand: Direct
Name: 119773951
Synonym: Sama_0814
Alternate gene names: NA
Gene position: 998630-999892 (Clockwise)
Preceding gene: 119773950
Following gene: 119773952
Centisome position: 23.19
GC content: 54.39
Gene sequence:
>1263_bases ATGAAAAAAATCGCCGTTATCGGCTCGGGAATTTCCGGCCTCACCACTGCCCATTTACTCTCAGGTCAGCACGAGGTGAG TCTGTTTGAGGCCAATGACTATCTCGGCGGACACACGGCCACCGTGGACGTGACGGTCGATGGCAAAGACTATGCGATAG ATACAGGATTTATCGTATTCAACGACCGTACCTATCCCAATTTTCAGAAACTGCTGTCGCGGCTGTCGGTGACCAGTATT CCCACTGAAATGAGCTTTTCGGTGCACAACCTCGACAGCGGTCTGGAGTACAACGGCCACACTCTGGCGACCCTGTTTGC CCAAAAGCGCAACCTCTTCAGTCCCAAGTTTTGGGGGTTCCTTAACGAAATCATTAGGTTTAATAAGCTTGGCAAGGCCT GTATTGAGTCCGGACATTACCCCTGCAACACCTTGGGTGAATTATTGGCCAAAGAGCAATTTTCAGACTTTTTTGCACGG CATTACATATTGCCCATGGGGGCGGCCATCTGGTCTTCGAGCCTGGATGATATGGCGGCCTTTGAGCTTAAGTTTTTCCT GCGCTTTTTCCACAATCATGGCCTGCTGAATGTCAGCGACCGCCCACAGTGGTACGTGCTCAAAGGTGGCTCACGCAGCT ACATTCCGGCGCTGGTGGCACCTTTTGCAGAGCGTATTCATCTTTCGACTCCGGTTAGTGCGGTGAAGCGACATGGCCAG GGGGTGTCTATTCAGACAAATGGTCAGGATTGGCATGAATTTGATGAACTGGTACTGGCCTGTCACAGCGATCAGGCCCT GAAGCTGCTCACCGATGCCTCAGATGCTGAGCGGGACGTTCTTGGCGCCTTGCCTTATCGGCGCAATGACGTGGTGCTGC ACACAGACACAGCGCTGCTGCCAAAACGCAAAGCCGCGTGGGCCAGCTGGAACTACCGTCTGGACGAAGACAACCAGCGT CCGGCTGCGGTGACTTACCATATGAACACATTGCAGCGGCTGCCAGCGGGCTCTCCCGACTTTATGGTGACCCTCAATCA GACCGATGCCATCGCCAAAGACAAAATTCTACGTCAGTTCAGTTATGCCCACCCGGTGTTTTCCTCGGCGGCCATGGCGG CACAGGCCCGCAGGATGGAGATTTGCGGCCAGCAGCACACTCACTTTGCTGGCGCCTACTGGTACAACGGCTTCCATGAA GACGGCGTCAGAAGCGCCCTGGATGTGTGCCAGCGCTTTGGTGTCAGTCTGGAGAGCGCATGA
Upstream 100 bases:
>100_bases CCGAAGCAATGTCAGTCGCCAGTCGGCCTGATATGAAGCTGGCTGAATGATTCAACCTGTGTCCATTTGAGCTTTTTACA TATCACCATTGGAAGATGAG
Downstream 100 bases:
>100_bases ACAGCGGCATCTTTTTTGGTCATGTGAGTCATCAGCGGCTGGGGGCGGTGCGCCACAGCTTCAGTTACCCCATGGCCATG CTGGTGATGGATCTGGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: FAD Dependent Oxidoreductase; Amine Oxidase Flavin-Containing; Dehydrogenase; Amine Oxidoreductase; Flavin Containing Amine Oxidoreductase; Flavin-Containing Amine Oxidase; Amino-Oxidase; Oxidoreductase; Amine Oxidase Flavin-Containing Superfamily; Amine Oxidase Flavin-Containing Protein; Amine Oxidase Protein; FAD-Dependent Oxidoreductase; Amine OxidaseFAD Dependent Oxidoreductase; Amino Oxidase; Amine-Oxidase; Fad Dependent Oxidoreductase; Flavin Containing Amine Oxidoreductase Protein; Flavin Containing Amine Oxidoreductas; Lipoprotein
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MKKIAVIGSGISGLTTAHLLSGQHEVSLFEANDYLGGHTATVDVTVDGKDYAIDTGFIVFNDRTYPNFQKLLSRLSVTSI PTEMSFSVHNLDSGLEYNGHTLATLFAQKRNLFSPKFWGFLNEIIRFNKLGKACIESGHYPCNTLGELLAKEQFSDFFAR HYILPMGAAIWSSSLDDMAAFELKFFLRFFHNHGLLNVSDRPQWYVLKGGSRSYIPALVAPFAERIHLSTPVSAVKRHGQ GVSIQTNGQDWHEFDELVLACHSDQALKLLTDASDAERDVLGALPYRRNDVVLHTDTALLPKRKAAWASWNYRLDEDNQR PAAVTYHMNTLQRLPAGSPDFMVTLNQTDAIAKDKILRQFSYAHPVFSSAAMAAQARRMEICGQQHTHFAGAYWYNGFHE DGVRSALDVCQRFGVSLESA
Sequences:
>Translated_420_residues MKKIAVIGSGISGLTTAHLLSGQHEVSLFEANDYLGGHTATVDVTVDGKDYAIDTGFIVFNDRTYPNFQKLLSRLSVTSI PTEMSFSVHNLDSGLEYNGHTLATLFAQKRNLFSPKFWGFLNEIIRFNKLGKACIESGHYPCNTLGELLAKEQFSDFFAR HYILPMGAAIWSSSLDDMAAFELKFFLRFFHNHGLLNVSDRPQWYVLKGGSRSYIPALVAPFAERIHLSTPVSAVKRHGQ GVSIQTNGQDWHEFDELVLACHSDQALKLLTDASDAERDVLGALPYRRNDVVLHTDTALLPKRKAAWASWNYRLDEDNQR PAAVTYHMNTLQRLPAGSPDFMVTLNQTDAIAKDKILRQFSYAHPVFSSAAMAAQARRMEICGQQHTHFAGAYWYNGFHE DGVRSALDVCQRFGVSLESA >Mature_420_residues MKKIAVIGSGISGLTTAHLLSGQHEVSLFEANDYLGGHTATVDVTVDGKDYAIDTGFIVFNDRTYPNFQKLLSRLSVTSI PTEMSFSVHNLDSGLEYNGHTLATLFAQKRNLFSPKFWGFLNEIIRFNKLGKACIESGHYPCNTLGELLAKEQFSDFFAR HYILPMGAAIWSSSLDDMAAFELKFFLRFFHNHGLLNVSDRPQWYVLKGGSRSYIPALVAPFAERIHLSTPVSAVKRHGQ GVSIQTNGQDWHEFDELVLACHSDQALKLLTDASDAERDVLGALPYRRNDVVLHTDTALLPKRKAAWASWNYRLDEDNQR PAAVTYHMNTLQRLPAGSPDFMVTLNQTDAIAKDKILRQFSYAHPVFSSAAMAAQARRMEICGQQHTHFAGAYWYNGFHE DGVRSALDVCQRFGVSLESA
Specific function: Unknown
COG id: COG2907
COG function: function code R; Predicted NAD/FAD-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46971; Mature: 46971
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIAVIGSGISGLTTAHLLSGQHEVSLFEANDYLGGHTATVDVTVDGKDYAIDTGFIVF CCEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEECCEEEE NDRTYPNFQKLLSRLSVTSIPTEMSFSVHNLDSGLEYNGHTLATLFAQKRNLFSPKFWGF CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH LNEIIRFNKLGKACIESGHYPCNTLGELLAKEQFSDFFARHYILPMGAAIWSSSLDDMAA HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH FELKFFLRFFHNHGLLNVSDRPQWYVLKGGSRSYIPALVAPFAERIHLSTPVSAVKRHGQ HHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHEECCCCHHHHHHCCC GVSIQTNGQDWHEFDELVLACHSDQALKLLTDASDAERDVLGALPYRRNDVVLHTDTALL CEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCCCCCEEEEECCCCC PKRKAAWASWNYRLDEDNQRPAAVTYHMNTLQRLPAGSPDFMVTLNQTDAIAKDKILRQF CCCCCHHCCCCEEECCCCCCCEEEEEEHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH SYAHPVFSSAAMAAQARRMEICGQQHTHFAGAYWYNGFHEDGVRSALDVCQRFGVSLESA HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHEECCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKKIAVIGSGISGLTTAHLLSGQHEVSLFEANDYLGGHTATVDVTVDGKDYAIDTGFIVF CCEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEECCEEEE NDRTYPNFQKLLSRLSVTSIPTEMSFSVHNLDSGLEYNGHTLATLFAQKRNLFSPKFWGF CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH LNEIIRFNKLGKACIESGHYPCNTLGELLAKEQFSDFFARHYILPMGAAIWSSSLDDMAA HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH FELKFFLRFFHNHGLLNVSDRPQWYVLKGGSRSYIPALVAPFAERIHLSTPVSAVKRHGQ HHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHEECCCCHHHHHHCCC GVSIQTNGQDWHEFDELVLACHSDQALKLLTDASDAERDVLGALPYRRNDVVLHTDTALL CEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCCCCCEEEEECCCCC PKRKAAWASWNYRLDEDNQRPAAVTYHMNTLQRLPAGSPDFMVTLNQTDAIAKDKILRQF CCCCCHHCCCCEEECCCCCCCEEEEEEHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH SYAHPVFSSAAMAAQARRMEICGQQHTHFAGAYWYNGFHEDGVRSALDVCQRFGVSLESA HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHEECCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA