| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773891
Identifier: 119773891
GI number: 119773891
Start: 929596
End: 931323
Strand: Direct
Name: 119773891
Synonym: Sama_0753
Alternate gene names: NA
Gene position: 929596-931323 (Clockwise)
Preceding gene: 119773889
Following gene: 119773896
Centisome position: 21.59
GC content: 48.96
Gene sequence:
>1728_bases ATGGCGCTTGCACAACCCTATGATCCTTCCCGCGACGAGATTTTCTGGCGAACCGCTGTTGCCAACATTCGTACGGGGCT TGAAAACTTCAACATGCTCACGCCAAAGTTCAACATTGAACCTCACCATCGGATTTCATCGGCGGGTTCCTGTTTTGCTC AGCATATAGGTAACTGGTTGACGCAAAATGATTACTCTTATAATAGGAGCCAATTAAACTCCGATGAAGTCTCCAGCTTT GCCTTTGGCAATATCTACACCCCTCGTTCGTTACTTCAGTGGTTTGTATGTTCCGATGATGAATTATCGGAGCACAGTGT GTACTTCGAGGCACAGTCCAGCCGTTACTTCGACTTGTTATTACCAAAAGTTGCTGACGCGGGCTATCCGTCACTGGATG AATTACTGGCGTTCAGGACGCTGGTGATGGAGGAAACCCGAGCTCAGTTGGCACAAAGTGAATGTTTTATTTTTACACTT GGACTGATTGAGACCTGGGTCGATCGCAACGGCATTTGTTATCCAAGTTGCCCCGGGGTGAAGTTTGGTGAGTATGATCC GGAGAAATACCAACTTAAGGTGTTTAATTATCAGGAAATATTTTCCGACCTCAGTGAGCTTTTCAAGCAAATCAAGGTTG TAAACCCTGACATACGTTTTGTGCTGACTGTATCTCCCGTCCCTTTGACGGCTACAGCCACAGATGACCACGTATTGGTG GCTAATGGCTATTCAAAATCGGTCCTGCGCGCAGTTGCGGGGGCATTCTGCCAAGGGCGGGATGATGTCAGCTACTTTCC ATCATTTGAACTTATCACCACCCCCTTACCGGGGGATTTTCGCTATCTGGAAAATCGGCGCACTGTATCTGAGAAAGGCG TTGGCTATGTGATGCGGCATTGGGCCACGTCGCTAAATGGTAAGCAAACACCAGATGCAAGCCACATCGAAGCTGCCTGC GATGATGAAATGCTGGATGCCATTAAGAAGGACACATCAAGTGAACTGGGCACACCGCTAACCCTCATTGGTGATAGCCA TTTTGGCAAGTTGGCCAAGTCTTTTGAGCGGCTTGGACAGTCCTGCTGTGGTGGCATGGTGATGAATGGTTCCGGATTCG CTGAGCATAAATTTACCCTGACCAAGGATGCGGACATCATGGTGCCGCTCGAAAGCGCAGAGTCCCGACGCCTGTGGCAG CCCATAATTAACAACCTCGACAGCTTATGCAGGGCTCAACGACTGTCGGAGTCCTGGGTATTGACCAATATTGGGCTGCA AACCCACAAGACAGTACCTGAGTTTATTCAATGGATGAGAGCTGAGCGTCCAGAGCGGTTGAATCAGATAGATATTGAGG ACTATTTGGAGTTCTTTGACGCCAACATGCGGGATCAAATGACCATAGTATTTCGCCTCAAGGAACAGGGGCACAGGGTT ATGGTGATTTCAGACACCCCATTCTGGCAGTACTTTGAAGACTCCAAGGGCATGGCCCCCTTCGTGATGGCCTACATGGA TGCGATGGAATATGCGTGGCAGCAGATGGGGGTTGAGTTTTTTCATGCAGCGCGCGTTTTTAACGAAGAGGTAAACGACC CAATGCCTTACGCCTCAACTTTCATTTCTGCAGACGGCAGTCGGGATTACTTCCATGGTGGGGATTCTTATTACGATTGG CTCGCCGGGAAATTATTGCCATTACTGAAAGCCTGCCGTATCTGGTGA
Upstream 100 bases:
>100_bases TTGATTTGTGCAGGGTTTTAGGAAATTTGCCCCATGGCCAAAGTTTTGGCTATGGGGCCAACGACTGGAATGGCTCAACT CTGACAAGGAGGTTTAGACC
Downstream 100 bases:
>100_bases TTTCTCATAATAGGCACTGTCGTCCTTTATTTTTTATCAACCTAAACAGATAGGTAAGAATTTAAGATGTCACAGTATGA GGAACGGATAGAGCGGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Gscfa Domain Protein; GSCFA Domain Protein; GSCFA Family Protein; GSCFA Family
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MALAQPYDPSRDEIFWRTAVANIRTGLENFNMLTPKFNIEPHHRISSAGSCFAQHIGNWLTQNDYSYNRSQLNSDEVSSF AFGNIYTPRSLLQWFVCSDDELSEHSVYFEAQSSRYFDLLLPKVADAGYPSLDELLAFRTLVMEETRAQLAQSECFIFTL GLIETWVDRNGICYPSCPGVKFGEYDPEKYQLKVFNYQEIFSDLSELFKQIKVVNPDIRFVLTVSPVPLTATATDDHVLV ANGYSKSVLRAVAGAFCQGRDDVSYFPSFELITTPLPGDFRYLENRRTVSEKGVGYVMRHWATSLNGKQTPDASHIEAAC DDEMLDAIKKDTSSELGTPLTLIGDSHFGKLAKSFERLGQSCCGGMVMNGSGFAEHKFTLTKDADIMVPLESAESRRLWQ PIINNLDSLCRAQRLSESWVLTNIGLQTHKTVPEFIQWMRAERPERLNQIDIEDYLEFFDANMRDQMTIVFRLKEQGHRV MVISDTPFWQYFEDSKGMAPFVMAYMDAMEYAWQQMGVEFFHAARVFNEEVNDPMPYASTFISADGSRDYFHGGDSYYDW LAGKLLPLLKACRIW
Sequences:
>Translated_575_residues MALAQPYDPSRDEIFWRTAVANIRTGLENFNMLTPKFNIEPHHRISSAGSCFAQHIGNWLTQNDYSYNRSQLNSDEVSSF AFGNIYTPRSLLQWFVCSDDELSEHSVYFEAQSSRYFDLLLPKVADAGYPSLDELLAFRTLVMEETRAQLAQSECFIFTL GLIETWVDRNGICYPSCPGVKFGEYDPEKYQLKVFNYQEIFSDLSELFKQIKVVNPDIRFVLTVSPVPLTATATDDHVLV ANGYSKSVLRAVAGAFCQGRDDVSYFPSFELITTPLPGDFRYLENRRTVSEKGVGYVMRHWATSLNGKQTPDASHIEAAC DDEMLDAIKKDTSSELGTPLTLIGDSHFGKLAKSFERLGQSCCGGMVMNGSGFAEHKFTLTKDADIMVPLESAESRRLWQ PIINNLDSLCRAQRLSESWVLTNIGLQTHKTVPEFIQWMRAERPERLNQIDIEDYLEFFDANMRDQMTIVFRLKEQGHRV MVISDTPFWQYFEDSKGMAPFVMAYMDAMEYAWQQMGVEFFHAARVFNEEVNDPMPYASTFISADGSRDYFHGGDSYYDW LAGKLLPLLKACRIW >Mature_574_residues ALAQPYDPSRDEIFWRTAVANIRTGLENFNMLTPKFNIEPHHRISSAGSCFAQHIGNWLTQNDYSYNRSQLNSDEVSSFA FGNIYTPRSLLQWFVCSDDELSEHSVYFEAQSSRYFDLLLPKVADAGYPSLDELLAFRTLVMEETRAQLAQSECFIFTLG LIETWVDRNGICYPSCPGVKFGEYDPEKYQLKVFNYQEIFSDLSELFKQIKVVNPDIRFVLTVSPVPLTATATDDHVLVA NGYSKSVLRAVAGAFCQGRDDVSYFPSFELITTPLPGDFRYLENRRTVSEKGVGYVMRHWATSLNGKQTPDASHIEAACD DEMLDAIKKDTSSELGTPLTLIGDSHFGKLAKSFERLGQSCCGGMVMNGSGFAEHKFTLTKDADIMVPLESAESRRLWQP IINNLDSLCRAQRLSESWVLTNIGLQTHKTVPEFIQWMRAERPERLNQIDIEDYLEFFDANMRDQMTIVFRLKEQGHRVM VISDTPFWQYFEDSKGMAPFVMAYMDAMEYAWQQMGVEFFHAARVFNEEVNDPMPYASTFISADGSRDYFHGGDSYYDWL AGKLLPLLKACRIW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65669; Mature: 65538
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALAQPYDPSRDEIFWRTAVANIRTGLENFNMLTPKFNIEPHHRISSAGSCFAQHIGNWL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH TQNDYSYNRSQLNSDEVSSFAFGNIYTPRSLLQWFVCSDDELSEHSVYFEAQSSRYFDLL CCCCCCCCHHHCCHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHH LPKVADAGYPSLDELLAFRTLVMEETRAQLAQSECFIFTLGLIETWVDRNGICYPSCPGV HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCC KFGEYDPEKYQLKVFNYQEIFSDLSELFKQIKVVNPDIRFVLTVSPVPLTATATDDHVLV CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCEEEECCCCEEEE ANGYSKSVLRAVAGAFCQGRDDVSYFPSFELITTPLPGDFRYLENRRTVSEKGVGYVMRH ECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCHHHCCHHHHHHH WATSLNGKQTPDASHIEAACDDEMLDAIKKDTSSELGTPLTLIGDSHFGKLAKSFERLGQ HHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHHHHH SCCGGMVMNGSGFAEHKFTLTKDADIMVPLESAESRRLWQPIINNLDSLCRAQRLSESWV HHHCCEEECCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE LTNIGLQTHKTVPEFIQWMRAERPERLNQIDIEDYLEFFDANMRDQMTIVFRLKEQGHRV EEECCCCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEE MVISDTPFWQYFEDSKGMAPFVMAYMDAMEYAWQQMGVEFFHAARVFNEEVNDPMPYAST EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH FISADGSRDYFHGGDSYYDWLAGKLLPLLKACRIW HEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALAQPYDPSRDEIFWRTAVANIRTGLENFNMLTPKFNIEPHHRISSAGSCFAQHIGNWL CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH TQNDYSYNRSQLNSDEVSSFAFGNIYTPRSLLQWFVCSDDELSEHSVYFEAQSSRYFDLL CCCCCCCCHHHCCHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHH LPKVADAGYPSLDELLAFRTLVMEETRAQLAQSECFIFTLGLIETWVDRNGICYPSCPGV HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCC KFGEYDPEKYQLKVFNYQEIFSDLSELFKQIKVVNPDIRFVLTVSPVPLTATATDDHVLV CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCEEEECCCCEEEE ANGYSKSVLRAVAGAFCQGRDDVSYFPSFELITTPLPGDFRYLENRRTVSEKGVGYVMRH ECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCHHHCCHHHHHHH WATSLNGKQTPDASHIEAACDDEMLDAIKKDTSSELGTPLTLIGDSHFGKLAKSFERLGQ HHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHHHHH SCCGGMVMNGSGFAEHKFTLTKDADIMVPLESAESRRLWQPIINNLDSLCRAQRLSESWV HHHCCEEECCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE LTNIGLQTHKTVPEFIQWMRAERPERLNQIDIEDYLEFFDANMRDQMTIVFRLKEQGHRV EEECCCCCCCCHHHHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEE MVISDTPFWQYFEDSKGMAPFVMAYMDAMEYAWQQMGVEFFHAARVFNEEVNDPMPYAST EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH FISADGSRDYFHGGDSYYDWLAGKLLPLLKACRIW HEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA