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The map label for this gene is gspD [C]

Identifier: 119773845

GI number: 119773845

Start: 868944

End: 870215

Strand: Direct

Name: gspD [C]

Synonym: Sama_0707

Alternate gene names: 119773845

Gene position: 868944-870215 (Clockwise)

Preceding gene: 119773844

Following gene: 119773846

Centisome position: 20.18

GC content: 54.32

Gene sequence:

>1272_bases
GTGATGCTTTCGGTCGCTTATGCTCATAACAATCAACCGCTTAAGCTTTATGTCGGCGCGGTAGAACTCTATAAGATTGC
CAACGTTGAGCGGGTTGTGGTGGGTAACGGTGGCGTGCTCAGTGCCAAGGTATTGGACGAGAAGAATGTGATTCTTATCG
GCGAGAGCGAAGGCTTGTCTGATATTCAGCTTTGGCAAAAAGACGGCACCGTGCGCAAGTTAAGCGTGGTGGTCACCAAA
GAAAACGCCCAGACCACAGTGGGTACCATGAAGCGGATGCTGGCCGAGTTTCCGTCCATTGAAGTGACAGAGTCGGACGG
CGTGATAGTGATCCACGGTGAGGCCGATGCCTCCCAGCGTGAAACTCTGGAAAAGGTGCTGGATGGCAAGGACAACATTC
TGCCACTCATCAAATACGTCAAATACGGTAAATCCATCGAGCCCATGGTGAAGATGGAAGTCAAAATCGTTGAGTTCAAC
AAATCCACCCTGAACAACATTGGGGTGCAATGGGAAAATGTGATGTCGGGTCCCGCCTTTGGGGCCGCCAAGGCATTTAC
CGCCAACCCGATTTTCAGCGTGTCGTCGCCCGGCCAATATGCCAACAGCATAGGCGGCGCCGTGTCCGATGCCATTGGCG
TTCTGGATACCCGAGGCTGGAGTTACTTTGGCATAGTGACAGGTATCGGCTCTCAAATTCAGTTGCTGGCTGAGAAGGGC
GATGCCCGCATGCTGGCCGAGCCCAATCTGACCACCCGCAGCGGCGAAGCCGCAAGTTTCCTCGCCGGGGGCGAGATCCC
CATCCGCACCGTGAGCGGAGTGGGCTCGGTAGATATCCAGTACAAGGAATACGGCATACGTTTGAACATAGAGCCCGTGG
TGGATGCCGATAACAATATCGTCAGCCGGGTGATGGCCGAGGTGAGCGCCGTCGACCCTTCCATCCAGCTCGAGGGCAGT
GCCCCCGGCTTTCTGACCCGTCGTACCGAGTCTGTGATTAACGTTAAAAACAAGCAAACCATGGTGATTTCCGGGCTGGT
TAACAGCGAAATGTCCAAGGTGGTCAATAAGTTTCCATTGCTGGGTGACATCCCCATTCTGGGTGAACTCTTCAAGTCCC
GTAATTTCCGTGAGGAAAAAACCGAGCTGGTGATTTTTGTGACCCCGACCGTGGTGTATCCCGGGGAAGACAGCCATGAG
AAGTCCCTCTCCCGCGCCCGGGAGCTGGTTGACGATGCGGCGAAACTGGAAGCCTTTTACATTCTGGATTAG

Upstream 100 bases:

>100_bases
TACCAAAAGAATTGATGGACGAATTAGCTCAGGGAAAAGTTAACACCGCATTATGAAAACTATTAACCAACTGATGATTT
TAGGCTGGGTACTTTGCTCA

Downstream 100 bases:

>100_bases
GAGCTGCCATGTTTAACATCATCGTCAGTACGACCAAGGGAACCAAGGTCGGTGAATTCAACTGTATTCACCGTGAGTGC
CATATCGGTAAGGACCCGGG

Product: putative type II and III secretion system outermembrane protein, secretin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MMLSVAYAHNNQPLKLYVGAVELYKIANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGTVRKLSVVVTK
ENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKSIEPMVKMEVKIVEFN
KSTLNNIGVQWENVMSGPAFGAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG
DARMLAEPNLTTRSGEAASFLAGGEIPIRTVSGVGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVDPSIQLEGS
APGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHE
KSLSRARELVDDAAKLEAFYILD

Sequences:

>Translated_423_residues
MMLSVAYAHNNQPLKLYVGAVELYKIANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGTVRKLSVVVTK
ENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKSIEPMVKMEVKIVEFN
KSTLNNIGVQWENVMSGPAFGAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG
DARMLAEPNLTTRSGEAASFLAGGEIPIRTVSGVGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVDPSIQLEGS
APGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHE
KSLSRARELVDDAAKLEAFYILD
>Mature_423_residues
MMLSVAYAHNNQPLKLYVGAVELYKIANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGTVRKLSVVVTK
ENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQRETLEKVLDGKDNILPLIKYVKYGKSIEPMVKMEVKIVEFN
KSTLNNIGVQWENVMSGPAFGAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG
DARMLAEPNLTTRSGEAASFLAGGEIPIRTVSGVGSVDIQYKEYGIRLNIEPVVDADNNIVSRVMAEVSAVDPSIQLEGS
APGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPLLGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHE
KSLSRARELVDDAAKLEAFYILD

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=270, Percent_Identity=30.3703703703704, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789793, Length=247, Percent_Identity=25.9109311740891, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 45844; Mature: 45844

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLSVAYAHNNQPLKLYVGAVELYKIANVERVVVGNGGVLSAKVLDEKNVILIGESEGLS
CEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEEEECCCCCC
DIQLWQKDGTVRKLSVVVTKENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQR
HHEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCHHH
ETLEKVLDGKDNILPLIKYVKYGKSIEPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAF
HHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHCCCEEHHHCCCCCC
GAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG
CCCCEEECCCEEECCCCCHHHHHHCHHHHHHHHHEECCCCEEEEEEECCCCEEEEEEECC
DARMLAEPNLTTRSGEAASFLAGGEIPIRTVSGVGSVDIQYKEYGIRLNIEPVVDADNNI
CCEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEECEEEEEEEEECCCCHH
VSRVMAEVSAVDPSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPL
HHHHHHHHHHCCCCEEECCCCCCCEEECCHHHEEECCCCEEEEEEHHHHHHHHHHHHCCC
LGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAFY
CCCCHHHHHHHHCCCCCCCCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHEEEEE
ILD
EEC
>Mature Secondary Structure
MMLSVAYAHNNQPLKLYVGAVELYKIANVERVVVGNGGVLSAKVLDEKNVILIGESEGLS
CEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEEEECCCCCC
DIQLWQKDGTVRKLSVVVTKENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEADASQR
HHEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCHHH
ETLEKVLDGKDNILPLIKYVKYGKSIEPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAF
HHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHCCCEEHHHCCCCCC
GAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG
CCCCEEECCCEEECCCCCHHHHHHCHHHHHHHHHEECCCCEEEEEEECCCCEEEEEEECC
DARMLAEPNLTTRSGEAASFLAGGEIPIRTVSGVGSVDIQYKEYGIRLNIEPVVDADNNI
CCEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEECEEEEEEEEECCCCHH
VSRVMAEVSAVDPSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFPL
HHHHHHHHHHCCCCEEECCCCCCCEEECCHHHEEECCCCEEEEEEHHHHHHHHHHHHCCC
LGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAFY
CCCCHHHHHHHHCCCCCCCCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHEEEEE
ILD
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]