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The map label for this gene is hofB [C]

Identifier: 119773846

GI number: 119773846

Start: 870224

End: 871993

Strand: Direct

Name: hofB [C]

Synonym: Sama_0708

Alternate gene names: 119773846

Gene position: 870224-871993 (Clockwise)

Preceding gene: 119773845

Following gene: 119773847

Centisome position: 20.21

GC content: 55.88

Gene sequence:

>1770_bases
ATGTTTAACATCATCGTCAGTACGACCAAGGGAACCAAGGTCGGTGAATTCAACTGTATTCACCGTGAGTGCCATATCGG
TAAGGACCCGGGGCACCTGATTGTGCTTCGGGGCATTAAGGTGGCCCGTCATCACGCTACACTGCGCCGGGAAGATGACG
GCATTTTCATCGAAGACAACCGCAGCATGACAGGCCTGAGGGTAAACGAGCAGCGGGAGAAGCTGTTTGGCCCCCTCAAA
TACACGGATAAAATCCAGATTGGGGATTATTTTATTCGGGTGCAGGACTCAGACAGCGGCAGCGGATTCACCACCGAATC
AGCGGCGCCTGATACCACTCCGGCTGGCACCAATGCCACAGACGTGCCTGCTCATCCTGCCGACGCGTCATTATCAAGTG
TCAGCGCGCAATTAAGCGTCAGTGCGCTCCCGGGCGCCGTTGCCACCGGAAAAGCTAAACCACCCGAAGCGCAAACGCCC
GAGCGTGAGCAAATTAAGTTGCGCAACCACTGGCGCCGTCAGGTGCACAGGGAACTCTTAAAACAGTTCGATTTGCGTCG
GGTAAATGTCAATGAAATGAGTGATATAGAGCTTCGTGAACAGAGTGAAGCCCTGATATTGCACATAGTCGGCCAAATGG
CCTTGCCCGAGACCATTGCCGCCACCGACCTTATCCGCGAAGTGCTGGATGAGACCATAGGTCTTGGGCCCCTTGAGGCC
CTGATTGCTGACGCAGATGTCACAGAAATCATGGTCAACAGCCACGACCAAATCTTCTTCGAGAAGTCCGGGCAATTGTA
TTTGTCTGATATTTCCTTCTCTGACGATCAGGCGGTGCTGGGGGCCATCGAGCGCATCGTGGCCCCCATTGGCCGGCGTA
TCGACGAAGGCTCGCCCATGGTGGATGCCCGTTTGAAGGACGGCTCGCGGGTAAACGCCGTGATCCCGCCGCTGGCACTC
AAGGGCCCCTGTATCACCATCCGTAAATTTATGCAGCGTCGTCTGGGTGCCAGCGACCTGGTTGGCTTTGGTTCCATGAG
TCAGCACATGGCGGACTTCCTGGAAATGGCGGTGAAGCAGAAGTGCAATGTGGTGATATCCGGCGGTACCGGCTCGGGTA
AAACCACCTTGCTCAACGTGCTGTCGAATTTTATCCCGGAAGATGAGCGCATCATTACCGTGGAGGATGCGGCAGAGCTC
AGGTTGTATCAGCCCAACCTGGTTTCCCTGGAAGCGCGTCCGCCCAACCAGGAAGGCAAGGGTGCCATTGAGATTCGCGA
TCTGGTGAAAAACTGTTTGCGGATGCGCCCCGACCGGGTGGTGATTGGTGAGTGCCGCGGCGGTGAGGCGCTGGACATGC
TGCAGGCCATGAACACCGGTCACGACGGTTCTCTGACCACGGCCCACTCCAACTCCCCCAGGGACTGTATTTCGCGCCTG
GAGGTGATGGTGATGATGTCGGGTATGGACCTGCCCATTCAGGCCATTCGCGAACAAATTGCCTCTGCGGTCAATATCAT
AGTGCAGCAATCGCGCTTCTCAGATGGTTCGAGGCGTATCACCAGCATCTGTGAAGTCACCGGGATGGAAGGCAGTACTG
TGCAGCTGTCAGAAATATTTAAGTTTCAGCAGACCGGCTTCAGTGAGCAGGGCAAGGTGATGGGGTTTTATACCGCCACA
GGTACCATTCCCGAGTTTTACGAGTCTCTGCGCCGACGGGGAGTGCGGGTTCAGTTGGATATCTTCGACAGGGATGCGCG
TTATGGGTGA

Upstream 100 bases:

>100_bases
CCGGGGAAGACAGCCATGAGAAGTCCCTCTCCCGCGCCCGGGAGCTGGTTGACGATGCGGCGAAACTGGAAGCCTTTTAC
ATTCTGGATTAGGAGCTGCC

Downstream 100 bases:

>100_bases
TGTGATGCTCGCCATGGTCCTGGCCTTTGTCTCAGTCACAGTGCTGGTGTGGTCTGCCAAGCATCTGGGTGAGTCGCTGG
CCAAACGATACCGGGAAACC

Product: type II/IV secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 589; Mature: 589

Protein sequence:

>589_residues
MFNIIVSTTKGTKVGEFNCIHRECHIGKDPGHLIVLRGIKVARHHATLRREDDGIFIEDNRSMTGLRVNEQREKLFGPLK
YTDKIQIGDYFIRVQDSDSGSGFTTESAAPDTTPAGTNATDVPAHPADASLSSVSAQLSVSALPGAVATGKAKPPEAQTP
EREQIKLRNHWRRQVHRELLKQFDLRRVNVNEMSDIELREQSEALILHIVGQMALPETIAATDLIREVLDETIGLGPLEA
LIADADVTEIMVNSHDQIFFEKSGQLYLSDISFSDDQAVLGAIERIVAPIGRRIDEGSPMVDARLKDGSRVNAVIPPLAL
KGPCITIRKFMQRRLGASDLVGFGSMSQHMADFLEMAVKQKCNVVISGGTGSGKTTLLNVLSNFIPEDERIITVEDAAEL
RLYQPNLVSLEARPPNQEGKGAIEIRDLVKNCLRMRPDRVVIGECRGGEALDMLQAMNTGHDGSLTTAHSNSPRDCISRL
EVMVMMSGMDLPIQAIREQIASAVNIIVQQSRFSDGSRRITSICEVTGMEGSTVQLSEIFKFQQTGFSEQGKVMGFYTAT
GTIPEFYESLRRRGVRVQLDIFDRDARYG

Sequences:

>Translated_589_residues
MFNIIVSTTKGTKVGEFNCIHRECHIGKDPGHLIVLRGIKVARHHATLRREDDGIFIEDNRSMTGLRVNEQREKLFGPLK
YTDKIQIGDYFIRVQDSDSGSGFTTESAAPDTTPAGTNATDVPAHPADASLSSVSAQLSVSALPGAVATGKAKPPEAQTP
EREQIKLRNHWRRQVHRELLKQFDLRRVNVNEMSDIELREQSEALILHIVGQMALPETIAATDLIREVLDETIGLGPLEA
LIADADVTEIMVNSHDQIFFEKSGQLYLSDISFSDDQAVLGAIERIVAPIGRRIDEGSPMVDARLKDGSRVNAVIPPLAL
KGPCITIRKFMQRRLGASDLVGFGSMSQHMADFLEMAVKQKCNVVISGGTGSGKTTLLNVLSNFIPEDERIITVEDAAEL
RLYQPNLVSLEARPPNQEGKGAIEIRDLVKNCLRMRPDRVVIGECRGGEALDMLQAMNTGHDGSLTTAHSNSPRDCISRL
EVMVMMSGMDLPIQAIREQIASAVNIIVQQSRFSDGSRRITSICEVTGMEGSTVQLSEIFKFQQTGFSEQGKVMGFYTAT
GTIPEFYESLRRRGVRVQLDIFDRDARYG
>Mature_589_residues
MFNIIVSTTKGTKVGEFNCIHRECHIGKDPGHLIVLRGIKVARHHATLRREDDGIFIEDNRSMTGLRVNEQREKLFGPLK
YTDKIQIGDYFIRVQDSDSGSGFTTESAAPDTTPAGTNATDVPAHPADASLSSVSAQLSVSALPGAVATGKAKPPEAQTP
EREQIKLRNHWRRQVHRELLKQFDLRRVNVNEMSDIELREQSEALILHIVGQMALPETIAATDLIREVLDETIGLGPLEA
LIADADVTEIMVNSHDQIFFEKSGQLYLSDISFSDDQAVLGAIERIVAPIGRRIDEGSPMVDARLKDGSRVNAVIPPLAL
KGPCITIRKFMQRRLGASDLVGFGSMSQHMADFLEMAVKQKCNVVISGGTGSGKTTLLNVLSNFIPEDERIITVEDAAEL
RLYQPNLVSLEARPPNQEGKGAIEIRDLVKNCLRMRPDRVVIGECRGGEALDMLQAMNTGHDGSLTTAHSNSPRDCISRL
EVMVMMSGMDLPIQAIREQIASAVNIIVQQSRFSDGSRRITSICEVTGMEGSTVQLSEIFKFQQTGFSEQGKVMGFYTAT
GTIPEFYESLRRRGVRVQLDIFDRDARYG

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 64940; Mature: 64940

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50006 FHA_DOMAIN ; PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNIIVSTTKGTKVGEFNCIHRECHIGKDPGHLIVLRGIKVARHHATLRREDDGIFIEDN
CEEEEEECCCCCCCCCCEEEHHHCCCCCCCCCEEEEECCHHHHHHHHHEECCCCEEEECC
RSMTGLRVNEQREKLFGPLKYTDKIQIGDYFIRVQDSDSGSGFTTESAAPDTTPAGTNAT
CCEECEEECHHHHHHCCCCCCCCEEEECEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
DVPAHPADASLSSVSAQLSVSALPGAVATGKAKPPEAQTPEREQIKLRNHWRRQVHRELL
CCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KQFDLRRVNVNEMSDIELREQSEALILHIVGQMALPETIAATDLIREVLDETIGLGPLEA
HHHCCEECCCCCCCCCHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
LIADADVTEIMVNSHDQIFFEKSGQLYLSDISFSDDQAVLGAIERIVAPIGRRIDEGSPM
HHHCCCHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
VDARLKDGSRVNAVIPPLALKGPCITIRKFMQRRLGASDLVGFGSMSQHMADFLEMAVKQ
EEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHC
KCNVVISGGTGSGKTTLLNVLSNFIPEDERIITVEDAAELRLYQPNLVSLEARPPNQEGK
CCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCEEEEECCCCCCCCC
GAIEIRDLVKNCLRMRPDRVVIGECRGGEALDMLQAMNTGHDGSLTTAHSNSPRDCISRL
CCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHH
EVMVMMSGMDLPIQAIREQIASAVNIIVQQSRFSDGSRRITSICEVTGMEGSTVQLSEIF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEHHHHH
KFQQTGFSEQGKVMGFYTATGTIPEFYESLRRRGVRVQLDIFDRDARYG
HHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MFNIIVSTTKGTKVGEFNCIHRECHIGKDPGHLIVLRGIKVARHHATLRREDDGIFIEDN
CEEEEEECCCCCCCCCCEEEHHHCCCCCCCCCEEEEECCHHHHHHHHHEECCCCEEEECC
RSMTGLRVNEQREKLFGPLKYTDKIQIGDYFIRVQDSDSGSGFTTESAAPDTTPAGTNAT
CCEECEEECHHHHHHCCCCCCCCEEEECEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
DVPAHPADASLSSVSAQLSVSALPGAVATGKAKPPEAQTPEREQIKLRNHWRRQVHRELL
CCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KQFDLRRVNVNEMSDIELREQSEALILHIVGQMALPETIAATDLIREVLDETIGLGPLEA
HHHCCEECCCCCCCCCHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH
LIADADVTEIMVNSHDQIFFEKSGQLYLSDISFSDDQAVLGAIERIVAPIGRRIDEGSPM
HHHCCCHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
VDARLKDGSRVNAVIPPLALKGPCITIRKFMQRRLGASDLVGFGSMSQHMADFLEMAVKQ
EEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHC
KCNVVISGGTGSGKTTLLNVLSNFIPEDERIITVEDAAELRLYQPNLVSLEARPPNQEGK
CCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCEEEEECCCCCCCCC
GAIEIRDLVKNCLRMRPDRVVIGECRGGEALDMLQAMNTGHDGSLTTAHSNSPRDCISRL
CCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHH
EVMVMMSGMDLPIQAIREQIASAVNIIVQQSRFSDGSRRITSICEVTGMEGSTVQLSEIF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEHHHHH
KFQQTGFSEQGKVMGFYTATGTIPEFYESLRRRGVRVQLDIFDRDARYG
HHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]