| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773832
Identifier: 119773832
GI number: 119773832
Start: 858008
End: 858559
Strand: Direct
Name: 119773832
Synonym: Sama_0694
Alternate gene names: NA
Gene position: 858008-858559 (Clockwise)
Preceding gene: 119773831
Following gene: 119773833
Centisome position: 19.93
GC content: 57.97
Gene sequence:
>552_bases ATGACCAAGAAGAACCCCTTGCTGAGGGCCTTGCCCTGTGCCCTGGGGCTGGCAATGGCCGGTGCTGTGGCACCGCTTTA TGCCTCAGATACTCAGGCTTTGCTGGACGATGCACTCAGCGCCGCACCTCCCACCTTGAGGGACAAGGTGACAGTGATGG ACTGGCAACACAATGTGCTGCAACAGGGCAGCAGTAACTATACCTGTTTCCCCACGCCGCCCAGTCTGCAGGGAAAGGCG CCCATGTGTATGGACGGACCCTGGATGATGTGGGCCGATGCCTGGTCCAATAAAAAGCCGTTTCAGGCCAAGTCGATAGG TATTTCCTATATGCTGGCCGGTGATGGCGGCGCCAGCAATACAGACCCCTTCGCCGAGGGCAAGACAGAGGACAATCAGT GGATAGTCGAAGGCCCGCACCTGATGATTATTACCCCCGATGCCGCCCTGTTGGACAGTCTGCCAACCGATCCCTATGAG GGTGGCCCCTATGTGATGTGGAAAGGGACGCCCTATGCCCACATCATGGTGCCGGTGGGACCGAGAAAGTAA
Upstream 100 bases:
>100_bases GTAACAACACCGGAAAACAGTTACCGGAAGTAGGTATTCAGAGGCAAGGGGTTGCCTGAGAGCATATCCAGGGACGTTTC ACTCATCAGAGGATAGTGTT
Downstream 100 bases:
>100_bases CCAGTCAAACGCCCATTCAGGGCGTTTTTTATAGACAGAATTCAGGATGCATGGCCTTTTTGCGCCATTGCATGCAAATC AATGTCTCTCCTCCATAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MTKKNPLLRALPCALGLAMAGAVAPLYASDTQALLDDALSAAPPTLRDKVTVMDWQHNVLQQGSSNYTCFPTPPSLQGKA PMCMDGPWMMWADAWSNKKPFQAKSIGISYMLAGDGGASNTDPFAEGKTEDNQWIVEGPHLMIITPDAALLDSLPTDPYE GGPYVMWKGTPYAHIMVPVGPRK
Sequences:
>Translated_183_residues MTKKNPLLRALPCALGLAMAGAVAPLYASDTQALLDDALSAAPPTLRDKVTVMDWQHNVLQQGSSNYTCFPTPPSLQGKA PMCMDGPWMMWADAWSNKKPFQAKSIGISYMLAGDGGASNTDPFAEGKTEDNQWIVEGPHLMIITPDAALLDSLPTDPYE GGPYVMWKGTPYAHIMVPVGPRK >Mature_182_residues TKKNPLLRALPCALGLAMAGAVAPLYASDTQALLDDALSAAPPTLRDKVTVMDWQHNVLQQGSSNYTCFPTPPSLQGKAP MCMDGPWMMWADAWSNKKPFQAKSIGISYMLAGDGGASNTDPFAEGKTEDNQWIVEGPHLMIITPDAALLDSLPTDPYEG GPYVMWKGTPYAHIMVPVGPRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19734; Mature: 19603
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKNPLLRALPCALGLAMAGAVAPLYASDTQALLDDALSAAPPTLRDKVTVMDWQHNVL CCCCCCHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHH QQGSSNYTCFPTPPSLQGKAPMCMDGPWMMWADAWSNKKPFQAKSIGISYMLAGDGGASN HCCCCCEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCEEECCCEEEEEECCCCCCC TDPFAEGKTEDNQWIVEGPHLMIITPDAALLDSLPTDPYEGGPYVMWKGTPYAHIMVPVG CCCCCCCCCCCCEEEEECCEEEEECCCHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECC PRK CCC >Mature Secondary Structure TKKNPLLRALPCALGLAMAGAVAPLYASDTQALLDDALSAAPPTLRDKVTVMDWQHNVL CCCCCHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHH QQGSSNYTCFPTPPSLQGKAPMCMDGPWMMWADAWSNKKPFQAKSIGISYMLAGDGGASN HCCCCCEEEECCCCCCCCCCCEEECCCEEEEEECCCCCCCCEEECCCEEEEEECCCCCCC TDPFAEGKTEDNQWIVEGPHLMIITPDAALLDSLPTDPYEGGPYVMWKGTPYAHIMVPVG CCCCCCCCCCCCEEEEECCEEEEECCCHHHHHCCCCCCCCCCCEEEECCCCEEEEEEECC PRK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA