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The map label for this gene is cmpR [H]

Identifier: 119773831

GI number: 119773831

Start: 856788

End: 857765

Strand: Direct

Name: cmpR [H]

Synonym: Sama_0693

Alternate gene names: 119773831

Gene position: 856788-857765 (Clockwise)

Preceding gene: 119773826

Following gene: 119773832

Centisome position: 19.9

GC content: 55.73

Gene sequence:

>978_bases
ATGGATAACCCCAGACTTAAACAACTCAGTATAAGACTGCTGCAGGTCTTCATTACCGTGGTGCGCCTTGGCAATGTGTC
GGCCGCGGCCAGACAGCTGCATCTCACTCAACCCACGGTTTCTCTGCAGTTGAAGAAGATTGCCGAGCTGGTTGGGGAGC
CATTACTGGAAAGCCGGGATGGCGTCATGCGACCAACCGATGTGGGTGAGGAAGTGTACCGGGCCGCCTGCGATATACTC
TCGCGCCTTGATGATTTGGACGATTTTCTTGGCGGCATAAAACAAGGGGAGAGCGGTCATATTCGCATCGGACTTGTCAC
CACGGCCAAGTATGTGATGCCCCGCATTCTGGGGCCTTTTTATCGTCGCTTCCCCAAGGTGCAGGTGACGCTGAGTATAG
GTAACCGTGCTCATGTGCTGAATCGCTTTGCCCATCAGGAGGATGACCTCTACCTCTTCAGCCATCCACCCGCAGGGGAA
TCTGTGCTGGCTTCGCGGATTATCACCAATCCGCTTAAATTGATTGCCCCGGCCGATCACTGGGCGGTGGGGCAAAAAGG
CCTTGGATTTGACGTGCTCAAGGGCGAGCGTTTTATTATGCGCGAGCCGGGTTCGGCCACCCGGATGATGTTTGAAAGCT
GGCTCAGTGCCCGTGGCATCGAACTCACTGACATCATGCAAATCGAGAGTAATGAAGCGATACGGTTAAGCGTGGCATCC
GGGCTGGGGTTGTCGGTGATTTCTGCCCATACCCTCAGCGAGGGCGATATGGGGCCTGAAAAGCCTGCGGTGCTGGACGT
GGCGGATTTTCCCCTGCGCAGCAACTGGTATCTGGTGGCACGGCGCGATAAACGGCTCCCCCAGAGCGCATTGCAGCTTA
TTCGTTTTATGGCAGAGCATTTGGGGGACTGTATTGACCCCGGTTATGTGGCCGACAACATAGAGGCACTCCACCGCGTC
TTCACCCCTTCCCGTTAA

Upstream 100 bases:

>100_bases
GGAGATTGTGCCCATGATTAGCTATATTGAAAAATAAATTTTATGAGCACCATATATAGATGTTTATCTATATATGGGTT
TGCCTTTAACGGGTCGACTG

Downstream 100 bases:

>100_bases
CCGCGTCCGTCTTTGGTTTTACTGATTGGCGGCAACTATACTTTGAGATGCAGTATACGGGTATGCTGCCGGGGCGCCTT
GTCCGTAACACACAAGCCGA

Product: RuBisCo operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MDNPRLKQLSIRLLQVFITVVRLGNVSAAARQLHLTQPTVSLQLKKIAELVGEPLLESRDGVMRPTDVGEEVYRAACDIL
SRLDDLDDFLGGIKQGESGHIRIGLVTTAKYVMPRILGPFYRRFPKVQVTLSIGNRAHVLNRFAHQEDDLYLFSHPPAGE
SVLASRIITNPLKLIAPADHWAVGQKGLGFDVLKGERFIMREPGSATRMMFESWLSARGIELTDIMQIESNEAIRLSVAS
GLGLSVISAHTLSEGDMGPEKPAVLDVADFPLRSNWYLVARRDKRLPQSALQLIRFMAEHLGDCIDPGYVADNIEALHRV
FTPSR

Sequences:

>Translated_325_residues
MDNPRLKQLSIRLLQVFITVVRLGNVSAAARQLHLTQPTVSLQLKKIAELVGEPLLESRDGVMRPTDVGEEVYRAACDIL
SRLDDLDDFLGGIKQGESGHIRIGLVTTAKYVMPRILGPFYRRFPKVQVTLSIGNRAHVLNRFAHQEDDLYLFSHPPAGE
SVLASRIITNPLKLIAPADHWAVGQKGLGFDVLKGERFIMREPGSATRMMFESWLSARGIELTDIMQIESNEAIRLSVAS
GLGLSVISAHTLSEGDMGPEKPAVLDVADFPLRSNWYLVARRDKRLPQSALQLIRFMAEHLGDCIDPGYVADNIEALHRV
FTPSR
>Mature_325_residues
MDNPRLKQLSIRLLQVFITVVRLGNVSAAARQLHLTQPTVSLQLKKIAELVGEPLLESRDGVMRPTDVGEEVYRAACDIL
SRLDDLDDFLGGIKQGESGHIRIGLVTTAKYVMPRILGPFYRRFPKVQVTLSIGNRAHVLNRFAHQEDDLYLFSHPPAGE
SVLASRIITNPLKLIAPADHWAVGQKGLGFDVLKGERFIMREPGSATRMMFESWLSARGIELTDIMQIESNEAIRLSVAS
GLGLSVISAHTLSEGDMGPEKPAVLDVADFPLRSNWYLVARRDKRLPQSALQLIRFMAEHLGDCIDPGYVADNIEALHRV
FTPSR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=25.2032520325203, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=27.0491803278689, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789204, Length=249, Percent_Identity=23.2931726907631, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=246, Percent_Identity=24.7967479674797, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788748, Length=305, Percent_Identity=21.9672131147541, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1790399, Length=242, Percent_Identity=23.5537190082645, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788481, Length=243, Percent_Identity=24.2798353909465, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=264, Percent_Identity=22.7272727272727, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=278, Percent_Identity=22.6618705035971, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=185, Percent_Identity=23.7837837837838, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=324, Percent_Identity=21.6049382716049, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=283, Percent_Identity=25.4416961130742, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36136; Mature: 36136

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNPRLKQLSIRLLQVFITVVRLGNVSAAARQLHLTQPTVSLQLKKIAELVGEPLLESRD
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCC
GVMRPTDVGEEVYRAACDILSRLDDLDDFLGGIKQGESGHIRIGLVTTAKYVMPRILGPF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
YRRFPKVQVTLSIGNRAHVLNRFAHQEDDLYLFSHPPAGESVLASRIITNPLKLIAPADH
HHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHEEECCCH
WAVGQKGLGFDVLKGERFIMREPGSATRMMFESWLSARGIELTDIMQIESNEAIRLSVAS
HHCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHCCCCHHHEEEECCCCEEEEEECC
GLGLSVISAHTLSEGDMGPEKPAVLDVADFPLRSNWYLVARRDKRLPQSALQLIRFMAEH
CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LGDCIDPGYVADNIEALHRVFTPSR
HHHHCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDNPRLKQLSIRLLQVFITVVRLGNVSAAARQLHLTQPTVSLQLKKIAELVGEPLLESRD
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHCCC
GVMRPTDVGEEVYRAACDILSRLDDLDDFLGGIKQGESGHIRIGLVTTAKYVMPRILGPF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
YRRFPKVQVTLSIGNRAHVLNRFAHQEDDLYLFSHPPAGESVLASRIITNPLKLIAPADH
HHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHEEECCCH
WAVGQKGLGFDVLKGERFIMREPGSATRMMFESWLSARGIELTDIMQIESNEAIRLSVAS
HHCCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHHHCCCCHHHEEEECCCCEEEEEECC
GLGLSVISAHTLSEGDMGPEKPAVLDVADFPLRSNWYLVARRDKRLPQSALQLIRFMAEH
CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
LGDCIDPGYVADNIEALHRVFTPSR
HHHHCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]