Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773758

Identifier: 119773758

GI number: 119773758

Start: 774196

End: 775281

Strand: Direct

Name: 119773758

Synonym: Sama_0620

Alternate gene names: NA

Gene position: 774196-775281 (Clockwise)

Preceding gene: 119773757

Following gene: 119773759

Centisome position: 17.98

GC content: 51.47

Gene sequence:

>1086_bases
ATGAAGCACAAATTGGCTATCTGCCTTGGCACGCTGCTGCTTTCAACACCGGCGTTGGCTGAGATTAATATATCCGGGTT
TGCCTCTGTAGTCGGTGGCAAGGTGTTGGAAGGCAGTGGGGTAGAGGAGTTTGGACTCGAACCTACCTTTCTGGCCGATT
ATCCCCTGGTGGGCGCCTACACAGAGGAGTTCAGCTTCGAACCCGACACCCTGTTTGGCCTGCAAATTTCTGCTGACTTA
TTGGACGGACTTTCCGCGACGGCGCAAATCGTCTCCCGGGGGGCCGACGACTTTTCTGCCAGCTTTGAGTGGGCTTATCT
CTCCTATGAGCTTAATGAACACTGGACAGTGCAGGCCGGTAAAAAGCGCCTGCCGCTGTACTACTACAGCGATTTCTTTG
ATGTGGGCTACGCCTATCCCTGGATTAGGCCACCAGCAGACAATTACACCTGGCAGATTTTTAACTATACCGGCGTGAGT
GCACTCTATAACTACCTGATAGGGGACTGGACGTTGACTGGTCAGGTGTATTTTGGCCGCGAAGATGATGAGCCCAACAA
GCTGCTGTCGGAATTCTTTTTCGGCGAGTCCACCCGGGAAATCTGGAAAGACATAGGCGGCGTAGTGGTGCAGCTTAACT
ATGAATGGCTGGATATTCGTCTCACCCATATGCAATACACCAACGAGCGCTACATTGGTGGTGAACAGGTGGAATGGGAC
GGAGAAACCGAGCGTGATGGAAAATTTTATGGTTTGTCGGTCAACATCGATTGGAACAATCTGGTGGTGCTGACTGAAAT
CAATCGCTTGACGCTTCAAGACTCGGATCTCGATACCTATTTGGTCACTCTGGGTTATCGCATTAAAGACTTCATGCCCT
TTGTATCTTATTCCGACTTTGATGATGGCAGTGAAATCCACAACACCACTTCAGTCGGGCTGCGCTGGGATTTCCACCCA
TCCGCGGCCTTTAAAATTCAATATGACGATGTGCAAGACGACGGAACCGGAGCCGGTACCGACGACTCCTGGCGGGTTGC
CGGGGACTCCAAGTCAATCAGCCTGGGCGTAGACCTGGTATTTTAG

Upstream 100 bases:

>100_bases
ATTTTTTGATATTGTTCATAAAAGTTGTCTTAAAAGTTGTCAATTTGTTACTCAAGCCTAAGCTTAAAGTCGGATACACC
TGACAAATAAAGGGTTTTGT

Downstream 100 bases:

>100_bases
GAGAGAGCCATGAAAATCGTGATTTCTGCCATCCTTTTATGCCTGACCGCCATGCAGGCCTGGGCCGGTGTTGCCGTGAT
AGTGCATCCTGCTAATGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKHKLAICLGTLLLSTPALAEINISGFASVVGGKVLEGSGVEEFGLEPTFLADYPLVGAYTEEFSFEPDTLFGLQISADL
LDGLSATAQIVSRGADDFSASFEWAYLSYELNEHWTVQAGKKRLPLYYYSDFFDVGYAYPWIRPPADNYTWQIFNYTGVS
ALYNYLIGDWTLTGQVYFGREDDEPNKLLSEFFFGESTREIWKDIGGVVVQLNYEWLDIRLTHMQYTNERYIGGEQVEWD
GETERDGKFYGLSVNIDWNNLVVLTEINRLTLQDSDLDTYLVTLGYRIKDFMPFVSYSDFDDGSEIHNTTSVGLRWDFHP
SAAFKIQYDDVQDDGTGAGTDDSWRVAGDSKSISLGVDLVF

Sequences:

>Translated_361_residues
MKHKLAICLGTLLLSTPALAEINISGFASVVGGKVLEGSGVEEFGLEPTFLADYPLVGAYTEEFSFEPDTLFGLQISADL
LDGLSATAQIVSRGADDFSASFEWAYLSYELNEHWTVQAGKKRLPLYYYSDFFDVGYAYPWIRPPADNYTWQIFNYTGVS
ALYNYLIGDWTLTGQVYFGREDDEPNKLLSEFFFGESTREIWKDIGGVVVQLNYEWLDIRLTHMQYTNERYIGGEQVEWD
GETERDGKFYGLSVNIDWNNLVVLTEINRLTLQDSDLDTYLVTLGYRIKDFMPFVSYSDFDDGSEIHNTTSVGLRWDFHP
SAAFKIQYDDVQDDGTGAGTDDSWRVAGDSKSISLGVDLVF
>Mature_361_residues
MKHKLAICLGTLLLSTPALAEINISGFASVVGGKVLEGSGVEEFGLEPTFLADYPLVGAYTEEFSFEPDTLFGLQISADL
LDGLSATAQIVSRGADDFSASFEWAYLSYELNEHWTVQAGKKRLPLYYYSDFFDVGYAYPWIRPPADNYTWQIFNYTGVS
ALYNYLIGDWTLTGQVYFGREDDEPNKLLSEFFFGESTREIWKDIGGVVVQLNYEWLDIRLTHMQYTNERYIGGEQVEWD
GETERDGKFYGLSVNIDWNNLVVLTEINRLTLQDSDLDTYLVTLGYRIKDFMPFVSYSDFDDGSEIHNTTSVGLRWDFHP
SAAFKIQYDDVQDDGTGAGTDDSWRVAGDSKSISLGVDLVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40829; Mature: 40829

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHKLAICLGTLLLSTPALAEINISGFASVVGGKVLEGSGVEEFGLEPTFLADYPLVGAY
CCCCHHHHHHHHHHCCCCEEEEECCHHHHHHCCEEEECCCCHHHCCCCEEEECCCEEEEE
TEEFSFEPDTLFGLQISADLLDGLSATAQIVSRGADDFSASFEWAYLSYELNEHWTVQAG
HHCCCCCCCEEEEEEEEHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEECC
KKRLPLYYYSDFFDVGYAYPWIRPPADNYTWQIFNYTGVSALYNYLIGDWTLTGQVYFGR
CCCCCEEEECCHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEEEEEEECC
EDDEPNKLLSEFFFGESTREIWKDIGGVVVQLNYEWLDIRLTHMQYTNERYIGGEQVEWD
CCCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCEEEEC
GETERDGKFYGLSVNIDWNNLVVLTEINRLTLQDSDLDTYLVTLGYRIKDFMPFVSYSDF
CCCCCCCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEEEEECCHHHHHCCCCCCCCC
DDGSEIHNTTSVGLRWDFHPSAAFKIQYDDVQDDGTGAGTDDSWRVAGDSKSISLGVDLV
CCCCHHCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEEEE
F
C
>Mature Secondary Structure
MKHKLAICLGTLLLSTPALAEINISGFASVVGGKVLEGSGVEEFGLEPTFLADYPLVGAY
CCCCHHHHHHHHHHCCCCEEEEECCHHHHHHCCEEEECCCCHHHCCCCEEEECCCEEEEE
TEEFSFEPDTLFGLQISADLLDGLSATAQIVSRGADDFSASFEWAYLSYELNEHWTVQAG
HHCCCCCCCEEEEEEEEHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEEEEECCEEEEECC
KKRLPLYYYSDFFDVGYAYPWIRPPADNYTWQIFNYTGVSALYNYLIGDWTLTGQVYFGR
CCCCCEEEECCHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEEEEEEECC
EDDEPNKLLSEFFFGESTREIWKDIGGVVVQLNYEWLDIRLTHMQYTNERYIGGEQVEWD
CCCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCEEEEC
GETERDGKFYGLSVNIDWNNLVVLTEINRLTLQDSDLDTYLVTLGYRIKDFMPFVSYSDF
CCCCCCCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEEEEECCHHHHHCCCCCCCCC
DDGSEIHNTTSVGLRWDFHPSAAFKIQYDDVQDDGTGAGTDDSWRVAGDSKSISLGVDLV
CCCCHHCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEEEEEEE
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA