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The map label for this gene is cph2 [H]

Identifier: 119773757

GI number: 119773757

Start: 772953

End: 774089

Strand: Direct

Name: cph2 [H]

Synonym: Sama_0619

Alternate gene names: 119773757

Gene position: 772953-774089 (Clockwise)

Preceding gene: 119773756

Following gene: 119773758

Centisome position: 17.95

GC content: 52.86

Gene sequence:

>1137_bases
GTGGATAAAGAATCACTGTCGTTTGATGAAGCGCTTAAGGACGAATCGCGCCAATACATGCTGGCAAGCTTTCAATGGTT
GAGTTTTACCAGCCTGGTGCTGCTGACTGCCGTTGGTCTCAATATCGCCTTGGAACCCGGCCTGAATTTGGGGTTGGATA
CGGCGTTTACCATGATGCTGCTGCCGGGCTCTCTCTGCCTGCTGTATTTGGGGCTCAGATTCGCCAGGGTTCCCTGGTCT
AGAAACCTACTATGGAACCTCTTCTTTTTAGCGGCGCTGGTCATCAGTTGGTTGATATCCATGTCGTTGCTGCGAAGCGC
GGGTCTGCTGGTGTTGCCGGGCATTGAAACCCTCAGTGATGTGCTCAGCCTGGCCATGGCCGTGGCGCTCTTTCCCAGTA
TAAAGTTGACTGCCGCGACGGTAGCGCCTTTTTTACTTTATTCAGCTTTTTATCGCTACGAAGTCTACCCGGAAAGTATT
TACTTTACTGTCCTGCGTACTCTGTTCATGTTTTTGATCATCATGAGTGCCCAGCGGGTGATTTTTAAATGGTTTAAAAA
GGCCGTGCGGCGCAATGTGGAAAAACGGCGGTTGCTCAAGCATTTTCGCCGCATGGCCTTGCTGGACGGTCTCACTGGCC
TCAGTAACAGGCGCCATTTTGATGAAATTCTGGATCAGGAAATTCGGGCCTCGACCCGGACCGGGCATCCGTTAAGCCTT
ATTCTGTTGGATATCGATTTCTTCAAACGGCTCAATGATGCGCTCGGACACCAGGCCGGTGACGACTGCTTGCGGCAACT
GGGGCAACTCTTGTCGGATGTGGCTGCCAGACCCAGGGATCTTGCTGTGCGCTATGGCGGTGAAGAGTTTGCGGTGCTGC
TGCCAGAAACCACACTAACAGGCGCAGTGGAAGTGGCCAATCGTATTGCGAAACTCCTGGCCAAAGCGGCCATACCTCAC
CCGGATTCTCAGGTTGCTTCGCATATTACTGTTTCTCAGGGTTTGGTTCAGTGGCAGCGGGGAATGGATGCTGAAGCCTT
GTTGGAGGCAAGTGATGCCGCGCTTTACCGGGCCAAAGAAAGTGGCCGTAACTGTTATGTACAAACGGTTACGCCAGCGG
GGGATAAGGCCGGTTAG

Upstream 100 bases:

>100_bases
GCCGGCTTTTTTGTGTCTTCTTCATGCTTGCGTACACCTAGAATGGTGCGCTGCACATGCTATAGTCATTCCATCATCTT
CGTAAGTATCGGAAATCTTA

Downstream 100 bases:

>100_bases
ACAGGCATTTTTTGATATTGTTCATAAAAGTTGTCTTAAAAGTTGTCAATTTGTTACTCAAGCCTAAGCTTAAAGTCGGA
TACACCTGACAAATAAAGGG

Product: response regulator receiver protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDKESLSFDEALKDESRQYMLASFQWLSFTSLVLLTAVGLNIALEPGLNLGLDTAFTMMLLPGSLCLLYLGLRFARVPWS
RNLLWNLFFLAALVISWLISMSLLRSAGLLVLPGIETLSDVLSLAMAVALFPSIKLTAATVAPFLLYSAFYRYEVYPESI
YFTVLRTLFMFLIIMSAQRVIFKWFKKAVRRNVEKRRLLKHFRRMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSL
ILLDIDFFKRLNDALGHQAGDDCLRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLTGAVEVANRIAKLLAKAAIPH
PDSQVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKESGRNCYVQTVTPAGDKAG

Sequences:

>Translated_378_residues
MDKESLSFDEALKDESRQYMLASFQWLSFTSLVLLTAVGLNIALEPGLNLGLDTAFTMMLLPGSLCLLYLGLRFARVPWS
RNLLWNLFFLAALVISWLISMSLLRSAGLLVLPGIETLSDVLSLAMAVALFPSIKLTAATVAPFLLYSAFYRYEVYPESI
YFTVLRTLFMFLIIMSAQRVIFKWFKKAVRRNVEKRRLLKHFRRMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSL
ILLDIDFFKRLNDALGHQAGDDCLRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLTGAVEVANRIAKLLAKAAIPH
PDSQVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKESGRNCYVQTVTPAGDKAG
>Mature_378_residues
MDKESLSFDEALKDESRQYMLASFQWLSFTSLVLLTAVGLNIALEPGLNLGLDTAFTMMLLPGSLCLLYLGLRFARVPWS
RNLLWNLFFLAALVISWLISMSLLRSAGLLVLPGIETLSDVLSLAMAVALFPSIKLTAATVAPFLLYSAFYRYEVYPESI
YFTVLRTLFMFLIIMSAQRVIFKWFKKAVRRNVEKRRLLKHFRRMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSL
ILLDIDFFKRLNDALGHQAGDDCLRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLTGAVEVANRIAKLLAKAAIPH
PDSQVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKESGRNCYVQTVTPAGDKAG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=35.8823529411765, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=37.7906976744186, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=198, Percent_Identity=32.8282828282828, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=32.5153374233129, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082007, Length=210, Percent_Identity=36.1904761904762, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=35.8490566037736, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=31.25, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081974, Length=199, Percent_Identity=28.1407035175879, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788381, Length=117, Percent_Identity=36.7521367521368, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=31.8181818181818, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=30.188679245283, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789650, Length=177, Percent_Identity=29.9435028248588, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 42203; Mature: 42203

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKESLSFDEALKDESRQYMLASFQWLSFTSLVLLTAVGLNIALEPGLNLGLDTAFTMML
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHH
LPGSLCLLYLGLRFARVPWSRNLLWNLFFLAALVISWLISMSLLRSAGLLVLPGIETLSD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHH
VLSLAMAVALFPSIKLTAATVAPFLLYSAFYRYEVYPESIYFTVLRTLFMFLIIMSAQRV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IFKWFKKAVRRNVEKRRLLKHFRRMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSL
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEE
ILLDIDFFKRLNDALGHQAGDDCLRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLT
EEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEEECCHHHH
GAVEVANRIAKLLAKAAIPHPDSQVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SGRNCYVQTVTPAGDKAG
CCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MDKESLSFDEALKDESRQYMLASFQWLSFTSLVLLTAVGLNIALEPGLNLGLDTAFTMML
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHH
LPGSLCLLYLGLRFARVPWSRNLLWNLFFLAALVISWLISMSLLRSAGLLVLPGIETLSD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHH
VLSLAMAVALFPSIKLTAATVAPFLLYSAFYRYEVYPESIYFTVLRTLFMFLIIMSAQRV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IFKWFKKAVRRNVEKRRLLKHFRRMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSL
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEE
ILLDIDFFKRLNDALGHQAGDDCLRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLT
EEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCEEEEEECCHHHH
GAVEVANRIAKLLAKAAIPHPDSQVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SGRNCYVQTVTPAGDKAG
CCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]