| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773740
Identifier: 119773740
GI number: 119773740
Start: 754093
End: 754584
Strand: Direct
Name: 119773740
Synonym: Sama_0602
Alternate gene names: NA
Gene position: 754093-754584 (Clockwise)
Preceding gene: 119773738
Following gene: 119773741
Centisome position: 17.51
GC content: 51.02
Gene sequence:
>492_bases ATGATTATCACTGACATGGAAAATCATTCACAGCAGCTTTGGAACATCTATCAGTCGGCAAGTTTCTTGTTGACTCAACA CCTTTCTCCCCACGCACACTTTGCCATTATCACTGCCTATAACCCTATGGGTGAGCTTCTGGATGCCTGCCAAAACCGTT TGCTTGACCGGCAACTGTTAAGGGACATAGAAGCCTTGGGCGTGCCTTATCGTGCCTTGATAGGCACCAATGAGCAGCTT TCCCACATGGAAAAAAGTTGGGCCGTGTTTATGGAACCTGACGACAGCGTTCGTTTGGCTCATAAATACCGGCAAAATGC GCTCTATTATGTGATGCGGGACGAGCTGATGTTGCTTCCCTGCCGGATGGACAGCGAACCCAAGACGTTGGGATCCTTCC GCTCCCGGGTTCGGCTGGTCCATGAATTGCCGGAGTTGGTGCCAACCGACAGGGCTGAGGGTATGCCATCATTGGGATCC CAGTTTCTGTGA
Upstream 100 bases:
>100_bases TTATTGAAAAATATATGAACTGGTGATTATCGGAATGAGATCCAGCTCACAAGGCTAGGCAGCGTAACAGAGTCTGCTAA ACTAGCTCAGGTTCTTTTGC
Downstream 100 bases:
>100_bases ACACAGCATTTTTTCAACTTGCATAATTTCGCATTGACTTGAATACCGCTTTATTGCTACTTTTTTCGTCCCTTCCCCGT GGAAGGCACAGAAGAGGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MIITDMENHSQQLWNIYQSASFLLTQHLSPHAHFAIITAYNPMGELLDACQNRLLDRQLLRDIEALGVPYRALIGTNEQL SHMEKSWAVFMEPDDSVRLAHKYRQNALYYVMRDELMLLPCRMDSEPKTLGSFRSRVRLVHELPELVPTDRAEGMPSLGS QFL
Sequences:
>Translated_163_residues MIITDMENHSQQLWNIYQSASFLLTQHLSPHAHFAIITAYNPMGELLDACQNRLLDRQLLRDIEALGVPYRALIGTNEQL SHMEKSWAVFMEPDDSVRLAHKYRQNALYYVMRDELMLLPCRMDSEPKTLGSFRSRVRLVHELPELVPTDRAEGMPSLGS QFL >Mature_163_residues MIITDMENHSQQLWNIYQSASFLLTQHLSPHAHFAIITAYNPMGELLDACQNRLLDRQLLRDIEALGVPYRALIGTNEQL SHMEKSWAVFMEPDDSVRLAHKYRQNALYYVMRDELMLLPCRMDSEPKTLGSFRSRVRLVHELPELVPTDRAEGMPSLGS QFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18857; Mature: 18857
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIITDMENHSQQLWNIYQSASFLLTQHLSPHAHFAIITAYNPMGELLDACQNRLLDRQLL CEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH RDIEALGVPYRALIGTNEQLSHMEKSWAVFMEPDDSVRLAHKYRQNALYYVMRDELMLLP HHHHHHCCCHHHHHCCCHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHEEEEECCEEEEC CRMDSEPKTLGSFRSRVRLVHELPELVPTDRAEGMPSLGSQFL CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIITDMENHSQQLWNIYQSASFLLTQHLSPHAHFAIITAYNPMGELLDACQNRLLDRQLL CEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH RDIEALGVPYRALIGTNEQLSHMEKSWAVFMEPDDSVRLAHKYRQNALYYVMRDELMLLP HHHHHHCCCHHHHHCCCHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHEEEEECCEEEEC CRMDSEPKTLGSFRSRVRLVHELPELVPTDRAEGMPSLGSQFL CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA