| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773731
Identifier: 119773731
GI number: 119773731
Start: 743359
End: 744024
Strand: Direct
Name: 119773731
Synonym: Sama_0593
Alternate gene names: NA
Gene position: 743359-744024 (Clockwise)
Preceding gene: 119773730
Following gene: 119773732
Centisome position: 17.26
GC content: 56.61
Gene sequence:
>666_bases ATGTCTGAGGCAAACTTTTCAGGAATTGGTACAGGTCTTGTGGGTCATGGCGCCCTGATCGAACGGCTGCTGCGGGGCGA GTTTATTTGCCGCGTGACTGACGAAGACGGCTGGCGTGCGCTCAAGTCGCCTGCCGTGCGCGAGCGTATCGAAACCTACC TCAACCAAATCAACCGCACTGTTGCCAGCGCCGGTGAAGGCGAGGTGTTCTTTTGCGGTTATGCCCAGTTGGGTGAGGCC GAGCGCAAGGTGATTTCCAGCCAGTTCAAGGATATCTGCCAGGCGCTCATTCCGCTGGTGGAGTGGCTCGTGTTGGTGCA GGAGGCCTCCGGCCAGGATACGCCCCTCACCGAAGGTGCACCAGTGCGTTTGACTGAGCTTCAGGGCCGTATCGAAGAGA CCCCGGCGTTTCGCGAGCAGCTTGGCAAACTCAGCCAGTACCGGCTTTTTGGCTCCACTTCAAGTAACGTCGATGCCCAG CTTAAGCTGGTGTTCAAGCGTCTGGTGGAGCTTGGCTTCCTTACTCGCCCCAATGTGGAAAAACAAATCTACATCGCCAC GGGTAAGCTTGATTATCTCTATGAAGTGATTCGCTTTATCGATGAAACTGAAGGGCTGAACCTGGAGGCGCAGGCCGAAA CCGCCACCCAGAGGGAGCTGATATGA
Upstream 100 bases:
>100_bases ATATCATCAACAAGCAAACCCGCAAGCTGCAGGTGGTGAAGCCCAAGAGCAACCCCATCGCCGATAAGCTGGCCAGCCGT ATTTCCAGGGAGGCGGTGTA
Downstream 100 bases:
>100_bases GCAGCAACCTGCACCAGTCCGGGGTGCGGCTGCTGAGGATGCTTGGTCGTCACGCCGAGACAGTGATGGATGTGTACCTG AGCGGCGCCGTGGACGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSEANFSGIGTGLVGHGALIERLLRGEFICRVTDEDGWRALKSPAVRERIETYLNQINRTVASAGEGEVFFCGYAQLGEA ERKVISSQFKDICQALIPLVEWLVLVQEASGQDTPLTEGAPVRLTELQGRIEETPAFREQLGKLSQYRLFGSTSSNVDAQ LKLVFKRLVELGFLTRPNVEKQIYIATGKLDYLYEVIRFIDETEGLNLEAQAETATQRELI
Sequences:
>Translated_221_residues MSEANFSGIGTGLVGHGALIERLLRGEFICRVTDEDGWRALKSPAVRERIETYLNQINRTVASAGEGEVFFCGYAQLGEA ERKVISSQFKDICQALIPLVEWLVLVQEASGQDTPLTEGAPVRLTELQGRIEETPAFREQLGKLSQYRLFGSTSSNVDAQ LKLVFKRLVELGFLTRPNVEKQIYIATGKLDYLYEVIRFIDETEGLNLEAQAETATQRELI >Mature_220_residues SEANFSGIGTGLVGHGALIERLLRGEFICRVTDEDGWRALKSPAVRERIETYLNQINRTVASAGEGEVFFCGYAQLGEAE RKVISSQFKDICQALIPLVEWLVLVQEASGQDTPLTEGAPVRLTELQGRIEETPAFREQLGKLSQYRLFGSTSSNVDAQL KLVFKRLVELGFLTRPNVEKQIYIATGKLDYLYEVIRFIDETEGLNLEAQAETATQRELI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24702; Mature: 24571
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEANFSGIGTGLVGHGALIERLLRGEFICRVTDEDGWRALKSPAVRERIETYLNQINRT CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHH VASAGEGEVFFCGYAQLGEAERKVISSQFKDICQALIPLVEWLVLVQEASGQDTPLTEGA HHCCCCCCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PVRLTELQGRIEETPAFREQLGKLSQYRLFGSTSSNVDAQLKLVFKRLVELGFLTRPNVE CEEHHHHHCHHHCCHHHHHHHCCHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC KQIYIATGKLDYLYEVIRFIDETEGLNLEAQAETATQRELI CEEEEEECCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC >Mature Secondary Structure SEANFSGIGTGLVGHGALIERLLRGEFICRVTDEDGWRALKSPAVRERIETYLNQINRT CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHH VASAGEGEVFFCGYAQLGEAERKVISSQFKDICQALIPLVEWLVLVQEASGQDTPLTEGA HHCCCCCCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PVRLTELQGRIEETPAFREQLGKLSQYRLFGSTSSNVDAQLKLVFKRLVELGFLTRPNVE CEEHHHHHCHHHCCHHHHHHHCCHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC KQIYIATGKLDYLYEVIRFIDETEGLNLEAQAETATQRELI CEEEEEECCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA