| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773732
Identifier: 119773732
GI number: 119773732
Start: 744021
End: 745241
Strand: Direct
Name: 119773732
Synonym: Sama_0594
Alternate gene names: NA
Gene position: 744021-745241 (Clockwise)
Preceding gene: 119773731
Following gene: 119773733
Centisome position: 17.28
GC content: 57.25
Gene sequence:
>1221_bases ATGAGCAGCAACCTGCACCAGTCCGGGGTGCGGCTGCTGAGGATGCTTGGTCGTCACGCCGAGACAGTGATGGATGTGTA CCTGAGCGGCGCCGTGGACGAGGCCAACGCCGATGCCGGTGTGCTGAAGAAGCTCACCGAGGCCGGCATTCTGTGGCGCC CTGAGGAAGACGAGGGCCTAAGGCTGACCCGCAGCGTGCGGGCGCTGCTCGAAGAGGGCCTTAAAGATGAGCGCAATCGC CAGATTAACGCCAACGTAGGCTCGGCGCTTGCCACCATCAAGACGCTGGCTAACCACTATAAGGAGGCGCGCAGCCACTC TGACTACAGCGCCGCGGAGGCGTATCTGGCCGACCTCAGTGAGCATGTGTACGCCTTTACCGAAAACCTTCGTTATTCCA TCCGTGTGCTGTGGGGGCGGATTAACAACGAATTCGGTTATGTCGGTACCATCAGCGCTAAAATCCGTGAGAACGAACTG GCCCAGAGCCAGGTGTCTGAGCTGTTGAACGGCCTGGAGCTGTTTCAGTTCAGCGAGCTTGGGGAAATCGCCTCTGATAT CCGTGAGCTTCGAAAACTGCTGGTAACCACCCTGCAGGAGACCCTGAGTGACTGTACTCAGGAGCTCAGTGTGGTGCAGG CAAGGCTGTTGGAGCTGCTTGGTCGTTTCCGGCAAATTCAGGGCCGTACCAGGCTGCTCAGGGGCTGGCTTCTGTACACA GATATGCACCCTGACTACGAGCCGATGGATCATGTGGCCCACCGCAAGGTGCCCATGCTGTTTAACCGCGCAGAGGCCAT GCTGGCCGATGCCCATGTGGATGTGCATAACCAGAGCCAGGAGCAGGAGCTGATGGAGATGGTGGCGCGCATCAAATCCA TCAGTCGCCTCGATCTAAAGCCTGCTGTCAAGGCGGCAGAAACCAGCGTGGTGCTGAGTGCGGCGGAAGACTTCGATATT CCGGAAAATCCACTCAAGCAGGATGTGGACGACTACTTTGTGGCGGTAATAGATTCAGGCAAGCGCCAGTCGGCGCTGGT GTACCTGCAGGAAAAAGCTTTGCCATGGGATTCAGAAAGCTGGATTTATCAGGTGATTGGCGGCTTTGAGGGCCTGAGCG AAGAGCATAAATCCTTCTTCGAACTGGAGCCTTTGGGTGAGCCTCATCCTGTGTATACCGGTAACTTCATTATCCGCGAC GTGGAGCTGTGGCTCAGTTAG
Upstream 100 bases:
>100_bases GTAAGCTTGATTATCTCTATGAAGTGATTCGCTTTATCGATGAAACTGAAGGGCTGAACCTGGAGGCGCAGGCCGAAACC GCCACCCAGAGGGAGCTGAT
Downstream 100 bases:
>100_bases CCCCGCAGTCTTGCCAAGGCCACCTCTGGGTGGCCTTCTTATTGGCTGTAACATGGCGTGCTGGGCTGGTGGTGGCGGTG GATGCAGAGAATTACTTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSSNLHQSGVRLLRMLGRHAETVMDVYLSGAVDEANADAGVLKKLTEAGILWRPEEDEGLRLTRSVRALLEEGLKDERNR QINANVGSALATIKTLANHYKEARSHSDYSAAEAYLADLSEHVYAFTENLRYSIRVLWGRINNEFGYVGTISAKIRENEL AQSQVSELLNGLELFQFSELGEIASDIRELRKLLVTTLQETLSDCTQELSVVQARLLELLGRFRQIQGRTRLLRGWLLYT DMHPDYEPMDHVAHRKVPMLFNRAEAMLADAHVDVHNQSQEQELMEMVARIKSISRLDLKPAVKAAETSVVLSAAEDFDI PENPLKQDVDDYFVAVIDSGKRQSALVYLQEKALPWDSESWIYQVIGGFEGLSEEHKSFFELEPLGEPHPVYTGNFIIRD VELWLS
Sequences:
>Translated_406_residues MSSNLHQSGVRLLRMLGRHAETVMDVYLSGAVDEANADAGVLKKLTEAGILWRPEEDEGLRLTRSVRALLEEGLKDERNR QINANVGSALATIKTLANHYKEARSHSDYSAAEAYLADLSEHVYAFTENLRYSIRVLWGRINNEFGYVGTISAKIRENEL AQSQVSELLNGLELFQFSELGEIASDIRELRKLLVTTLQETLSDCTQELSVVQARLLELLGRFRQIQGRTRLLRGWLLYT DMHPDYEPMDHVAHRKVPMLFNRAEAMLADAHVDVHNQSQEQELMEMVARIKSISRLDLKPAVKAAETSVVLSAAEDFDI PENPLKQDVDDYFVAVIDSGKRQSALVYLQEKALPWDSESWIYQVIGGFEGLSEEHKSFFELEPLGEPHPVYTGNFIIRD VELWLS >Mature_405_residues SSNLHQSGVRLLRMLGRHAETVMDVYLSGAVDEANADAGVLKKLTEAGILWRPEEDEGLRLTRSVRALLEEGLKDERNRQ INANVGSALATIKTLANHYKEARSHSDYSAAEAYLADLSEHVYAFTENLRYSIRVLWGRINNEFGYVGTISAKIRENELA QSQVSELLNGLELFQFSELGEIASDIRELRKLLVTTLQETLSDCTQELSVVQARLLELLGRFRQIQGRTRLLRGWLLYTD MHPDYEPMDHVAHRKVPMLFNRAEAMLADAHVDVHNQSQEQELMEMVARIKSISRLDLKPAVKAAETSVVLSAAEDFDIP ENPLKQDVDDYFVAVIDSGKRQSALVYLQEKALPWDSESWIYQVIGGFEGLSEEHKSFFELEPLGEPHPVYTGNFIIRDV ELWLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46042; Mature: 45910
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNLHQSGVRLLRMLGRHAETVMDVYLSGAVDEANADAGVLKKLTEAGILWRPEEDEGL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCCCH RLTRSVRALLEEGLKDERNRQINANVGSALATIKTLANHYKEARSHSDYSAAEAYLADLS HHHHHHHHHHHHCCHHHHCCEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EHVYAFTENLRYSIRVLWGRINNEFGYVGTISAKIRENELAQSQVSELLNGLELFQFSEL HHHHHHHHCCHHEEHHEEEHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH GEIASDIRELRKLLVTTLQETLSDCTQELSVVQARLLELLGRFRQIQGRTRLLRGWLLYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DMHPDYEPMDHVAHRKVPMLFNRAEAMLADAHVDVHNQSQEQELMEMVARIKSISRLDLK CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC PAVKAAETSVVLSAAEDFDIPENPLKQDVDDYFVAVIDSGKRQSALVYLQEKALPWDSES HHHHHHHHHHHEECHHCCCCCCCHHHHCHHHHEEHHCCCCCCCHHEEEEEHHCCCCCCHH WIYQVIGGFEGLSEEHKSFFELEPLGEPHPVYTGNFIIRDVELWLS HHHHHHHHHCCCCHHHHHHEEECCCCCCCCEEECCEEEEEHHHHCC >Mature Secondary Structure SSNLHQSGVRLLRMLGRHAETVMDVYLSGAVDEANADAGVLKKLTEAGILWRPEEDEGL CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEECCCCCCCH RLTRSVRALLEEGLKDERNRQINANVGSALATIKTLANHYKEARSHSDYSAAEAYLADLS HHHHHHHHHHHHCCHHHHCCEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EHVYAFTENLRYSIRVLWGRINNEFGYVGTISAKIRENELAQSQVSELLNGLELFQFSEL HHHHHHHHCCHHEEHHEEEHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH GEIASDIRELRKLLVTTLQETLSDCTQELSVVQARLLELLGRFRQIQGRTRLLRGWLLYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DMHPDYEPMDHVAHRKVPMLFNRAEAMLADAHVDVHNQSQEQELMEMVARIKSISRLDLK CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC PAVKAAETSVVLSAAEDFDIPENPLKQDVDDYFVAVIDSGKRQSALVYLQEKALPWDSES HHHHHHHHHHHEECHHCCCCCCCHHHHCHHHHEEHHCCCCCCCHHEEEEEHHCCCCCCHH WIYQVIGGFEGLSEEHKSFFELEPLGEPHPVYTGNFIIRDVELWLS HHHHHHHHHCCCCHHHHHHEEECCCCCCCCEEECCEEEEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA