| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fusA2 [H]
Identifier: 119773722
GI number: 119773722
Start: 729256
End: 731346
Strand: Direct
Name: fusA2 [H]
Synonym: Sama_0584
Alternate gene names: 119773722
Gene position: 729256-731346 (Clockwise)
Preceding gene: 119773721
Following gene: 119773723
Centisome position: 16.94
GC content: 52.13
Gene sequence:
>2091_bases ATGACCGATTTATCAAAATACAGAAACATTGGTATTTTCGCTCACGTTGACGCGGGTAAAACCACGACCACCGAGCGTAT CCTCAAGCTGACCGGTAAAATCCACAAACTGGGCGAAGTTCACGATGGCGCTTCTACCATGGACTTCATGGATCAGGAAG CAGAGCGTGGTATTACCATTCAGTCTGCTGCCACCACCTGTTTCTGGAAAGGTCACCGCTTTAACGTAATCGACACCCCC GGTCACGTTGACTTCACCGTTGAAGTTTATCGTTCTCTGAAGGTTCTGGACGGCGGTATCGGTGTATTCTGCGGTAGCGG CGGTGTAGAACCACAATCAGAAACCAACTGGCGTTATGCCAACGAGTCTGAAGTAGCTCGTTTGATCTTCGTAAACAAGC TGGACCGTATCGGTGCCGACTTCCTGCGCGTAGTAGGTCAGGTTAAGAAAGTACTGGCTGCCAACCCGCTGGTAATGACT CTGCCTATCGGTCGTGAAGACGAATTCACAGGCGTTGTTGACGTACTGAACCGTCAGGCTTTCATTTGGGACGATTCAGG TCTGCCAGAAAACTACACTGTGACCGACGTTCCTGCCGACATGGTTGACCTGGTTGAAGAATACCGTGAAATGCTGGTTG AGACTGCCGTTGAGCAGGACGACGACCTGATGGAAGCTTACATGGAAGGTGAAGAGCCTTCTATCGAAGACCTGAAGCGT TGTATCCGTAAGGGTACCATCAACCTGTCTTTCTTCCCTACCTTCTGCGGCTCTGCGTTCAAGAACAAAGGTATGCAGCT GGTACTGGACGCAGTAGTTGACTACCTGCCTTCTCCAACTGAAGTTGAGCCACAGCCTCTGACTGATCCAGAGACTGGTG AAGAAACCGGCAAAGTTGCTACCGTTTCTGTAGACGAGCCACTGCGCGCTCTGGCGTTCAAGATCATGGACGACCGTTTC GGCGCCCTGACCTTCGTACGTATCTATTCTGGTAAGCTGAAGAAGGGTGACACCATCCTGAACTCTGCTACCGGTAAAAC TGAACGCATCGGCCGTATGGTGGAAATGCACGCCAACGATCGTAACGAAATCGACTCTGCCCAGGCTGGTGACATCATCG CCGTTGTAGGTATGAAGAACGTTCAGACCGGTCACACCCTGTGTGATCCTAAGCACGAGTGTACTCTCGAGCCAATGATC TTCCCAACGCCTGTAATCTCTATCGCTGTTACTCCTAAGGACAAAGGCGCTTCTGAGAAGCTGGGTGTTGCTCTGGGTAA GATGGTTGCTGAAGATCCATCATTCCAGGTTGAAACCGACCAGGAAACCGGTGACACCATCCTGAAAGGTATGGGTGAGC TGCACCTGGACATCAAGGTAGACATCCTGAAGCGTACTTTCGGCGTTGAGCTGACTGTAGGTGCTCCACAGGTAGCCTAT CGTGAAACCATCACTGCCGCCATCGAAGACAGCTACACTCACAAGAAGCAGTCTGGTGGTTCTGGTCAGTACGGTAAGAT TGACTACCGCATCCGTCCTGGTGAGCCAGGTACCGGCTTCACCTTCAAGTCTGCCGTAGTGGGTGGTAACGTTCCTCGTG AATTCTGGCCTGCCGTTGAGTCTGGCTTCGAAGAAATGATGAGCCAAGGTCCTCTGGCTGGCTTCCCCGTACTGGACGTT GAAGTTGAGCTGTTTGACGGTGCTTACCACGCAGTTGACTCCTCTGCCATCGCGTTCGAAATCGCCGCTAAAGGTGCATT CCGTCAGTCCATGCCTAAGGCCAAGCCACAGCTGCTCGAGCCTATCATGAAGGTTGACGTGTTCACTCCAGACGATCACG TAGGTGACGTAATCGGTGACCTGAACCGTCGTCGCGGTATGATCAAGGATCAGGAAGCTGGTCTGACTGGCGTACGCGTT AAGGCAGACGTACCGCTGGCCGAAATGTTCGGTTACATCGGTCACCTGCGTACCATGACCTCTGGTCGTGGTCAGTTCTC CATGGAATTCTCTCACTACAATCCATGTCCAGCCAACGTGGCTGAGACTGTAATTGCTGAGACCAAGGCCAAGAACGCTG CCAAGAAGTAA
Upstream 100 bases:
>100_bases TTCCCAATTACAATATGCGCCTCAAATCCTGATGTGTGGTCTGCTGCTTTTTTGTGGCATACTCCGTCTACTTTTATAAA CCAAGCAAAAAAGTTGAATC
Downstream 100 bases:
>100_bases TTAATACTTCGGTCCATAAAAACCCGCCTATGTGGCGGGTTTTTTTATGCCTGTAATTTGGGTTATTCAGTTTGAATCAA GCATGGCGGCTTAGACTGTT
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G 2 [H]
Number of amino acids: Translated: 696; Mature: 695
Protein sequence:
>696_residues MTDLSKYRNIGIFAHVDAGKTTTTERILKLTGKIHKLGEVHDGASTMDFMDQEAERGITIQSAATTCFWKGHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANESEVARLIFVNKLDRIGADFLRVVGQVKKVLAANPLVMT LPIGREDEFTGVVDVLNRQAFIWDDSGLPENYTVTDVPADMVDLVEEYREMLVETAVEQDDDLMEAYMEGEEPSIEDLKR CIRKGTINLSFFPTFCGSAFKNKGMQLVLDAVVDYLPSPTEVEPQPLTDPETGEETGKVATVSVDEPLRALAFKIMDDRF GALTFVRIYSGKLKKGDTILNSATGKTERIGRMVEMHANDRNEIDSAQAGDIIAVVGMKNVQTGHTLCDPKHECTLEPMI FPTPVISIAVTPKDKGASEKLGVALGKMVAEDPSFQVETDQETGDTILKGMGELHLDIKVDILKRTFGVELTVGAPQVAY RETITAAIEDSYTHKKQSGGSGQYGKIDYRIRPGEPGTGFTFKSAVVGGNVPREFWPAVESGFEEMMSQGPLAGFPVLDV EVELFDGAYHAVDSSAIAFEIAAKGAFRQSMPKAKPQLLEPIMKVDVFTPDDHVGDVIGDLNRRRGMIKDQEAGLTGVRV KADVPLAEMFGYIGHLRTMTSGRGQFSMEFSHYNPCPANVAETVIAETKAKNAAKK
Sequences:
>Translated_696_residues MTDLSKYRNIGIFAHVDAGKTTTTERILKLTGKIHKLGEVHDGASTMDFMDQEAERGITIQSAATTCFWKGHRFNVIDTP GHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANESEVARLIFVNKLDRIGADFLRVVGQVKKVLAANPLVMT LPIGREDEFTGVVDVLNRQAFIWDDSGLPENYTVTDVPADMVDLVEEYREMLVETAVEQDDDLMEAYMEGEEPSIEDLKR CIRKGTINLSFFPTFCGSAFKNKGMQLVLDAVVDYLPSPTEVEPQPLTDPETGEETGKVATVSVDEPLRALAFKIMDDRF GALTFVRIYSGKLKKGDTILNSATGKTERIGRMVEMHANDRNEIDSAQAGDIIAVVGMKNVQTGHTLCDPKHECTLEPMI FPTPVISIAVTPKDKGASEKLGVALGKMVAEDPSFQVETDQETGDTILKGMGELHLDIKVDILKRTFGVELTVGAPQVAY RETITAAIEDSYTHKKQSGGSGQYGKIDYRIRPGEPGTGFTFKSAVVGGNVPREFWPAVESGFEEMMSQGPLAGFPVLDV EVELFDGAYHAVDSSAIAFEIAAKGAFRQSMPKAKPQLLEPIMKVDVFTPDDHVGDVIGDLNRRRGMIKDQEAGLTGVRV KADVPLAEMFGYIGHLRTMTSGRGQFSMEFSHYNPCPANVAETVIAETKAKNAAKK >Mature_695_residues TDLSKYRNIGIFAHVDAGKTTTTERILKLTGKIHKLGEVHDGASTMDFMDQEAERGITIQSAATTCFWKGHRFNVIDTPG HVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANESEVARLIFVNKLDRIGADFLRVVGQVKKVLAANPLVMTL PIGREDEFTGVVDVLNRQAFIWDDSGLPENYTVTDVPADMVDLVEEYREMLVETAVEQDDDLMEAYMEGEEPSIEDLKRC IRKGTINLSFFPTFCGSAFKNKGMQLVLDAVVDYLPSPTEVEPQPLTDPETGEETGKVATVSVDEPLRALAFKIMDDRFG ALTFVRIYSGKLKKGDTILNSATGKTERIGRMVEMHANDRNEIDSAQAGDIIAVVGMKNVQTGHTLCDPKHECTLEPMIF PTPVISIAVTPKDKGASEKLGVALGKMVAEDPSFQVETDQETGDTILKGMGELHLDIKVDILKRTFGVELTVGAPQVAYR ETITAAIEDSYTHKKQSGGSGQYGKIDYRIRPGEPGTGFTFKSAVVGGNVPREFWPAVESGFEEMMSQGPLAGFPVLDVE VELFDGAYHAVDSSAIAFEIAAKGAFRQSMPKAKPQLLEPIMKVDVFTPDDHVGDVIGDLNRRRGMIKDQEAGLTGVRVK ADVPLAEMFGYIGHLRTMTSGRGQFSMEFSHYNPCPANVAETVIAETKAKNAAKK
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=691, Percent_Identity=44.1389290882779, Blast_Score=563, Evalue=1e-160, Organism=Homo sapiens, GI19923640, Length=713, Percent_Identity=37.4474053295933, Blast_Score=415, Evalue=1e-116, Organism=Homo sapiens, GI25306287, Length=688, Percent_Identity=35.4651162790698, Blast_Score=360, Evalue=3e-99, Organism=Homo sapiens, GI25306283, Length=395, Percent_Identity=42.7848101265823, Blast_Score=281, Evalue=1e-75, Organism=Homo sapiens, GI157426893, Length=159, Percent_Identity=37.7358490566038, Blast_Score=107, Evalue=5e-23, Organism=Homo sapiens, GI4503483, Length=503, Percent_Identity=24.4532803180915, Blast_Score=102, Evalue=2e-21, Organism=Homo sapiens, GI94966754, Length=139, Percent_Identity=33.8129496402878, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI1789738, Length=696, Percent_Identity=55.0287356321839, Blast_Score=768, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=516, Percent_Identity=26.5503875968992, Blast_Score=135, Evalue=1e-32, Organism=Escherichia coli, GI1788922, Length=183, Percent_Identity=35.5191256830601, Blast_Score=100, Evalue=6e-22, Organism=Escherichia coli, GI48994988, Length=145, Percent_Identity=38.6206896551724, Blast_Score=96, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17533571, Length=696, Percent_Identity=39.5114942528736, Blast_Score=507, Evalue=1e-144, Organism=Caenorhabditis elegans, GI17556745, Length=685, Percent_Identity=29.9270072992701, Blast_Score=274, Evalue=1e-73, Organism=Caenorhabditis elegans, GI17557151, Length=152, Percent_Identity=40.1315789473684, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17506493, Length=498, Percent_Identity=24.4979919678715, Blast_Score=101, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6323098, Length=700, Percent_Identity=42.8571428571429, Blast_Score=573, Evalue=1e-164, Organism=Saccharomyces cerevisiae, GI6322359, Length=782, Percent_Identity=31.074168797954, Blast_Score=342, Evalue=1e-94, Organism=Saccharomyces cerevisiae, GI6324707, Length=418, Percent_Identity=25.8373205741627, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6320593, Length=418, Percent_Identity=25.8373205741627, Blast_Score=106, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6323320, Length=151, Percent_Identity=35.0993377483444, Blast_Score=89, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6324166, Length=153, Percent_Identity=31.3725490196078, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582462, Length=692, Percent_Identity=41.0404624277457, Blast_Score=539, Evalue=1e-153, Organism=Drosophila melanogaster, GI221458488, Length=724, Percent_Identity=32.7348066298343, Blast_Score=358, Evalue=8e-99, Organism=Drosophila melanogaster, GI24585711, Length=501, Percent_Identity=24.5508982035928, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI24585713, Length=501, Percent_Identity=24.5508982035928, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI24585709, Length=501, Percent_Identity=24.5508982035928, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI78706572, Length=182, Percent_Identity=35.1648351648352, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI28574573, Length=141, Percent_Identity=34.0425531914894, Blast_Score=82, Evalue=2e-15,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 76218; Mature: 76086
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLSKYRNIGIFAHVDAGKTTTTERILKLTGKIHKLGEVHDGASTMDFMDQEAERGITI CCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEE QSAATTCFWKGHRFNVIDTPGHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYA EECCCEEEECCCEEEEECCCCCEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC NESEVARLIFVNKLDRIGADFLRVVGQVKKVLAANPLVMTLPIGREDEFTGVVDVLNRQA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCE FIWDDSGLPENYTVTDVPADMVDLVEEYREMLVETAVEQDDDLMEAYMEGEEPSIEDLKR EEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHH CIRKGTINLSFFPTFCGSAFKNKGMQLVLDAVVDYLPSPTEVEPQPLTDPETGEETGKVA HHHHCCCEEEECHHHHCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE TVSVDEPLRALAFKIMDDRFGALTFVRIYSGKLKKGDTILNSATGKTERIGRMVEMHAND EEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHEECCCC RNEIDSAQAGDIIAVVGMKNVQTGHTLCDPKHECTLEPMIFPTPVISIAVTPKDKGASEK CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCEECCCCEEEEEECCCCCCCCHH LGVALGKMVAEDPSFQVETDQETGDTILKGMGELHLDIKVDILKRTFGVELTVGAPQVAY HHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCCEEEEEEEEEEHHHCCEEEEECCCCHHH RETITAAIEDSYTHKKQSGGSGQYGKIDYRIRPGEPGTGFTFKSAVVGGNVPREFWPAVE HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEHHCCCCCCCHHHHHHHH SGFEEMMSQGPLAGFPVLDVEVELFDGAYHAVDSSAIAFEIAAKGAFRQSMPKAKPQLLE HHHHHHHHCCCCCCCCEEEEEEEEECCHHHHCCCCCEEEEEHHCCHHHHCCCCCCHHHHH PIMKVDVFTPDDHVGDVIGDLNRRRGMIKDQEAGLTGVRVKADVPLAEMFGYIGHLRTMT HHHHHEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC SGRGQFSMEFSHYNPCPANVAETVIAETKAKNAAKK CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TDLSKYRNIGIFAHVDAGKTTTTERILKLTGKIHKLGEVHDGASTMDFMDQEAERGITI CCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEE QSAATTCFWKGHRFNVIDTPGHVDFTVEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYA EECCCEEEECCCEEEEECCCCCEEEEHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC NESEVARLIFVNKLDRIGADFLRVVGQVKKVLAANPLVMTLPIGREDEFTGVVDVLNRQA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCE FIWDDSGLPENYTVTDVPADMVDLVEEYREMLVETAVEQDDDLMEAYMEGEEPSIEDLKR EEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHH CIRKGTINLSFFPTFCGSAFKNKGMQLVLDAVVDYLPSPTEVEPQPLTDPETGEETGKVA HHHHCCCEEEECHHHHCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE TVSVDEPLRALAFKIMDDRFGALTFVRIYSGKLKKGDTILNSATGKTERIGRMVEMHAND EEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHEECCCC RNEIDSAQAGDIIAVVGMKNVQTGHTLCDPKHECTLEPMIFPTPVISIAVTPKDKGASEK CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEECCEECCCCEEEEEECCCCCCCCHH LGVALGKMVAEDPSFQVETDQETGDTILKGMGELHLDIKVDILKRTFGVELTVGAPQVAY HHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCCEEEEEEEEEEHHHCCEEEEECCCCHHH RETITAAIEDSYTHKKQSGGSGQYGKIDYRIRPGEPGTGFTFKSAVVGGNVPREFWPAVE HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEHHCCCCCCCHHHHHHHH SGFEEMMSQGPLAGFPVLDVEVELFDGAYHAVDSSAIAFEIAAKGAFRQSMPKAKPQLLE HHHHHHHHCCCCCCCCEEEEEEEEECCHHHHCCCCCEEEEEHHCCHHHHCCCCCCHHHHH PIMKVDVFTPDDHVGDVIGDLNRRRGMIKDQEAGLTGVRVKADVPLAEMFGYIGHLRTMT HHHHHEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC SGRGQFSMEFSHYNPCPANVAETVIAETKAKNAAKK CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]