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The map label for this gene is yciR [C]

Identifier: 119773721

GI number: 119773721

Start: 727391

End: 728977

Strand: Direct

Name: yciR [C]

Synonym: Sama_0583

Alternate gene names: 119773721

Gene position: 727391-728977 (Clockwise)

Preceding gene: 119773720

Following gene: 119773722

Centisome position: 16.89

GC content: 51.48

Gene sequence:

>1587_bases
TTGATCCCTAATCGCCAGAAGCTTTATGTCAAAGTTGCTGTTGCCATCGCGGTGGGAGCCTTTCTCGCGGCAGTGGTCGC
CTGCCTCTATTTTTTCTGGGATGCGCGGGAAACCAAACTCAGGGAAGTCAAAAACCAACTTGGACAAATTGCCTTAACGG
TGCAAAAAACTGCCTCAGTTGCCCTCTATGTCAAGGACGTGGAGCTGGGTAAAGAAATCGTTGAGGGTCTTGAGGTCAAT
GATCTGGTGGCCGGCGCTTTGCTCACCGCAGACAGCGGTGACTGGGTGAGTTCCAGCGGTTTTGCCGCAGATGACTTACT
GCAGGTGCTGGAATTTGACATTCCCCATCCTTTTTTTGCCGGTGAGGTGCTGGGCAAGCTCAAGTTGCTGCCAAACAACG
AATACATTCAATCAAGGGCCACTGAGGTTGCACTCAAACAAGCTTGGATGTTGGTGCTTCAATCGGCATTGATTGCACTG
CTTGTTTCCCTGTTGGTGCATAAAACCCTGACAGCGCCGTTAAATCGCCTGACCTCGAACTTTGAGAATATTAAGCCCGG
TGACAATGACCCGCTCAACGTGCCCAAATACCATGCTCAGGACGAAATAGGCAGCCTGGTGCGGGGTATCAATCAGCTGG
TGGCCAACCTGAATCAATCTATCGAAAAAGAGCGGAGCTTGCGGCAAAGGACAGAGCTGTTGGAGCGTAAATTCCGGCTC
ATTTTTGAAAGGGCTACCGCCGGTATTTGCCTGATAGACCCCGGCAATCATGTGCTCGTTGCCAACGAGGCATTCCAGCG
TCTGTGTGGCACTGAATCCATAGATAACCAACCAGCCCTCAGCCACTGGTTTGAAGAAGAAGCCGAATTAGCGCGTTTTT
TCGATGAACTCAGGGGGAATGCAAATCTCAATCACGTTGAGATGGAGCTGCAGCTGCGCAGTCAGCAAAGCGCGCAGCTC
AAATGGGTTCACTGCCTGTTTTCCAAAGTGGAAGACCGCACTCAGACGCTAATTGAAGTGATGATGTATGACATCACTGA
ACGCACATACAGGGAACGGATGATTCGGTTTGAAGCCGAGCATGACCCCTTGACCCAGCTTAAGAATCGCCGCTCAGGTG
AACGCCTGTTGGTTGATATGATGCGAAAAGTCGATCAAACCAGGACACTGATGGGCGTGCTGCTGATTGATTTGGATAAA
TTCAAACCTGTGAATGATATCTACGGTCATGAAGCCGGTGATTCGGTATTGAAAACCGTCGCCGAACGCCTTGTGAAGCT
GGTCGGCGATGGAATTGCTATCCGTTGGGGCGGCGATGAGTTTCTGATTGGCATTACCGACGTTGATGAGGATTACAACA
AGCTGCGTCTACTTGCCCAGGAAATATTGGTTCAGGTATCCAGGCCGATAGCTATTCGCGGCAGTCTTTCCTGCGAAGTG
GACGCCAGTGTGGGGATTGCCATTTATCCCCACCACGGCCATACCCTGGAGGCGCTGCTTGAGGCCGCAGACGTTGCCAT
GTATGAGGTCAAAGAGCAGGGGCGGGGGAGTTTTCGTATTGGCAGGATTTCTTCCGGTGCTGCCTGA

Upstream 100 bases:

>100_bases
CAGCGGCAAGCCTTGCTTGAGTTGATGAACAGCACCCCCTCAGGTATTACTTTTGTCAAAAGCACTGAACTGGACCCGGC
ATTAAAGGTGGTATACAAAT

Downstream 100 bases:

>100_bases
ACAAAAAAACCGTCACGGCAACGGCAGCTTAACTCAGTGTCCGTGCAAAAAAACAGCGAATTTATTTGCCAAAGATAAAC
AGCTTTAAGGTTGATTTTTA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MIPNRQKLYVKVAVAIAVGAFLAAVVACLYFFWDARETKLREVKNQLGQIALTVQKTASVALYVKDVELGKEIVEGLEVN
DLVAGALLTADSGDWVSSSGFAADDLLQVLEFDIPHPFFAGEVLGKLKLLPNNEYIQSRATEVALKQAWMLVLQSALIAL
LVSLLVHKTLTAPLNRLTSNFENIKPGDNDPLNVPKYHAQDEIGSLVRGINQLVANLNQSIEKERSLRQRTELLERKFRL
IFERATAGICLIDPGNHVLVANEAFQRLCGTESIDNQPALSHWFEEEAELARFFDELRGNANLNHVEMELQLRSQQSAQL
KWVHCLFSKVEDRTQTLIEVMMYDITERTYRERMIRFEAEHDPLTQLKNRRSGERLLVDMMRKVDQTRTLMGVLLIDLDK
FKPVNDIYGHEAGDSVLKTVAERLVKLVGDGIAIRWGGDEFLIGITDVDEDYNKLRLLAQEILVQVSRPIAIRGSLSCEV
DASVGIAIYPHHGHTLEALLEAADVAMYEVKEQGRGSFRIGRISSGAA

Sequences:

>Translated_528_residues
MIPNRQKLYVKVAVAIAVGAFLAAVVACLYFFWDARETKLREVKNQLGQIALTVQKTASVALYVKDVELGKEIVEGLEVN
DLVAGALLTADSGDWVSSSGFAADDLLQVLEFDIPHPFFAGEVLGKLKLLPNNEYIQSRATEVALKQAWMLVLQSALIAL
LVSLLVHKTLTAPLNRLTSNFENIKPGDNDPLNVPKYHAQDEIGSLVRGINQLVANLNQSIEKERSLRQRTELLERKFRL
IFERATAGICLIDPGNHVLVANEAFQRLCGTESIDNQPALSHWFEEEAELARFFDELRGNANLNHVEMELQLRSQQSAQL
KWVHCLFSKVEDRTQTLIEVMMYDITERTYRERMIRFEAEHDPLTQLKNRRSGERLLVDMMRKVDQTRTLMGVLLIDLDK
FKPVNDIYGHEAGDSVLKTVAERLVKLVGDGIAIRWGGDEFLIGITDVDEDYNKLRLLAQEILVQVSRPIAIRGSLSCEV
DASVGIAIYPHHGHTLEALLEAADVAMYEVKEQGRGSFRIGRISSGAA
>Mature_528_residues
MIPNRQKLYVKVAVAIAVGAFLAAVVACLYFFWDARETKLREVKNQLGQIALTVQKTASVALYVKDVELGKEIVEGLEVN
DLVAGALLTADSGDWVSSSGFAADDLLQVLEFDIPHPFFAGEVLGKLKLLPNNEYIQSRATEVALKQAWMLVLQSALIAL
LVSLLVHKTLTAPLNRLTSNFENIKPGDNDPLNVPKYHAQDEIGSLVRGINQLVANLNQSIEKERSLRQRTELLERKFRL
IFERATAGICLIDPGNHVLVANEAFQRLCGTESIDNQPALSHWFEEEAELARFFDELRGNANLNHVEMELQLRSQQSAQL
KWVHCLFSKVEDRTQTLIEVMMYDITERTYRERMIRFEAEHDPLTQLKNRRSGERLLVDMMRKVDQTRTLMGVLLIDLDK
FKPVNDIYGHEAGDSVLKTVAERLVKLVGDGIAIRWGGDEFLIGITDVDEDYNKLRLLAQEILVQVSRPIAIRGSLSCEV
DASVGIAIYPHHGHTLEALLEAADVAMYEVKEQGRGSFRIGRISSGAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=37.5, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=190, Percent_Identity=32.6315789473684, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=32, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=33.695652173913, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=31.7365269461078, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.7380952380952, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=30.1136363636364, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081977, Length=160, Percent_Identity=35, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=29.585798816568, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=32.9411764705882, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 59180; Mature: 59180

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPNRQKLYVKVAVAIAVGAFLAAVVACLYFFWDARETKLREVKNQLGQIALTVQKTASV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCEE
ALYVKDVELGKEIVEGLEVNDLVAGALLTADSGDWVSSSGFAADDLLQVLEFDIPHPFFA
EEEEEHHHHHHHHHCCCCHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
GEVLGKLKLLPNNEYIQSRATEVALKQAWMLVLQSALIALLVSLLVHKTLTAPLNRLTSN
HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FENIKPGDNDPLNVPKYHAQDEIGSLVRGINQLVANLNQSIEKERSLRQRTELLERKFRL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFERATAGICLIDPGNHVLVANEAFQRLCGTESIDNQPALSHWFEEEAELARFFDELRGN
HHHHCCCCEEEECCCCEEEEECHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ANLNHVEMELQLRSQQSAQLKWVHCLFSKVEDRTQTLIEVMMYDITERTYRERMIRFEAE
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HDPLTQLKNRRSGERLLVDMMRKVDQTRTLMGVLLIDLDKFKPVNDIYGHEAGDSVLKTV
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHH
AERLVKLVGDGIAIRWGGDEFLIGITDVDEDYNKLRLLAQEILVQVSRPIAIRGSLSCEV
HHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
DASVGIAIYPHHGHTLEALLEAADVAMYEVKEQGRGSFRIGRISSGAA
ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure
MIPNRQKLYVKVAVAIAVGAFLAAVVACLYFFWDARETKLREVKNQLGQIALTVQKTASV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCEE
ALYVKDVELGKEIVEGLEVNDLVAGALLTADSGDWVSSSGFAADDLLQVLEFDIPHPFFA
EEEEEHHHHHHHHHCCCCHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
GEVLGKLKLLPNNEYIQSRATEVALKQAWMLVLQSALIALLVSLLVHKTLTAPLNRLTSN
HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FENIKPGDNDPLNVPKYHAQDEIGSLVRGINQLVANLNQSIEKERSLRQRTELLERKFRL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFERATAGICLIDPGNHVLVANEAFQRLCGTESIDNQPALSHWFEEEAELARFFDELRGN
HHHHCCCCEEEECCCCEEEEECHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ANLNHVEMELQLRSQQSAQLKWVHCLFSKVEDRTQTLIEVMMYDITERTYRERMIRFEAE
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HDPLTQLKNRRSGERLLVDMMRKVDQTRTLMGVLLIDLDKFKPVNDIYGHEAGDSVLKTV
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHH
AERLVKLVGDGIAIRWGGDEFLIGITDVDEDYNKLRLLAQEILVQVSRPIAIRGSLSCEV
HHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
DASVGIAIYPHHGHTLEALLEAADVAMYEVKEQGRGSFRIGRISSGAA
ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]