| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773669
Identifier: 119773669
GI number: 119773669
Start: 652541
End: 653227
Strand: Direct
Name: 119773669
Synonym: Sama_0529
Alternate gene names: NA
Gene position: 652541-653227 (Clockwise)
Preceding gene: 119773665
Following gene: 119773670
Centisome position: 15.15
GC content: 53.86
Gene sequence:
>687_bases ATGAATACAAGAACCAGCGCAGATAAACGTGGCTTCAGTGGCGCACAGGTACTGCTCATTATTTTGGCCGTGATGTTACT GACGGTCGTGACCAGTTTTGTGATTATCCGTAGCTATATTTTCCCAAGCCCATTCACCCCTGTGACTCTGAGCGCCAAAG AGGAAAAGAAACTCGAGGCCAAGCTGGACACCCTGGGTTGGGATAGTCAACGGCCATCAAATAGAGACAGGCAAGGCAAT GCCCAACGGGGAGACTCGGACCTGACTCCCGAACCCTACCGCGAGCATGATGGTGATCGGCAGGTGACTTTCAGCGAAAA AGAGGTCAATGCCATGATTGGCCGCAGCCCGGAGTTCGCCGAGCGACTGGCGATTGATTTTTCAGACAACCTCGCCAGTG CCAAACTGCTCATCCCCATTCCCAGAGACTTTCCCATCATGGCCGGTGAAACCCTGAGGGTGAATGCGGGGCTGGATATC CATTTGGATCAGCGTCGCCGTCCTGTGGTGGCCCTGGTTGGGGTGAGTCTGATGGGCGTCCCCCTTCCCAATGCCTGGCT AGGTAATATGAAGCAGGTGAATCTGGTGAGCGAGTTCGGTGACAGTGGTTTCTGGAATGCCTTTGCTGACGGGGTTGAAG ACATAGAGATCCGTGAAGGCGAGCTGTATATCAAGCTCAAACCCTGA
Upstream 100 bases:
>100_bases CGAAACGGCAGCGTGATTGACTCGTCTCGCCATTCGTGGTGCTGTCCTTTCGAGCGTCAGGGCGGTAACATCCCGGGCAA AGACGATAGGGGACAAGTGG
Downstream 100 bases:
>100_bases ACACGCTGTGGCCTTCACTGCCATGTGTGTTGGGATGTGGCTTGCTGCAGTGGCATGTATCGCCAAGCTTATTGGAGTTT GCCAGTACGGCTGGGGTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MNTRTSADKRGFSGAQVLLIILAVMLLTVVTSFVIIRSYIFPSPFTPVTLSAKEEKKLEAKLDTLGWDSQRPSNRDRQGN AQRGDSDLTPEPYREHDGDRQVTFSEKEVNAMIGRSPEFAERLAIDFSDNLASAKLLIPIPRDFPIMAGETLRVNAGLDI HLDQRRRPVVALVGVSLMGVPLPNAWLGNMKQVNLVSEFGDSGFWNAFADGVEDIEIREGELYIKLKP
Sequences:
>Translated_228_residues MNTRTSADKRGFSGAQVLLIILAVMLLTVVTSFVIIRSYIFPSPFTPVTLSAKEEKKLEAKLDTLGWDSQRPSNRDRQGN AQRGDSDLTPEPYREHDGDRQVTFSEKEVNAMIGRSPEFAERLAIDFSDNLASAKLLIPIPRDFPIMAGETLRVNAGLDI HLDQRRRPVVALVGVSLMGVPLPNAWLGNMKQVNLVSEFGDSGFWNAFADGVEDIEIREGELYIKLKP >Mature_228_residues MNTRTSADKRGFSGAQVLLIILAVMLLTVVTSFVIIRSYIFPSPFTPVTLSAKEEKKLEAKLDTLGWDSQRPSNRDRQGN AQRGDSDLTPEPYREHDGDRQVTFSEKEVNAMIGRSPEFAERLAIDFSDNLASAKLLIPIPRDFPIMAGETLRVNAGLDI HLDQRRRPVVALVGVSLMGVPLPNAWLGNMKQVNLVSEFGDSGFWNAFADGVEDIEIREGELYIKLKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25370; Mature: 25370
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTRTSADKRGFSGAQVLLIILAVMLLTVVTSFVIIRSYIFPSPFTPVTLSAKEEKKLEA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHH KLDTLGWDSQRPSNRDRQGNAQRGDSDLTPEPYREHDGDRQVTFSEKEVNAMIGRSPEFA HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECHHHHHHHHCCCHHHH ERLAIDFSDNLASAKLLIPIPRDFPIMAGETLRVNAGLDIHLDQRRRPVVALVGVSLMGV HHEEECCCCCCCCCEEEEECCCCCCEECCCEEEECCCCEEEECCCCCCEEEEECHHHCCC PLPNAWLGNMKQVNLVSEFGDSGFWNAFADGVEDIEIREGELYIKLKP CCCCHHHCCCHHHHHHHHCCCCCCHHHHHCCCCCEEEECCEEEEEECC >Mature Secondary Structure MNTRTSADKRGFSGAQVLLIILAVMLLTVVTSFVIIRSYIFPSPFTPVTLSAKEEKKLEA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHH KLDTLGWDSQRPSNRDRQGNAQRGDSDLTPEPYREHDGDRQVTFSEKEVNAMIGRSPEFA HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECHHHHHHHHCCCHHHH ERLAIDFSDNLASAKLLIPIPRDFPIMAGETLRVNAGLDIHLDQRRRPVVALVGVSLMGV HHEEECCCCCCCCCEEEEECCCCCCEECCCEEEECCCCEEEECCCCCCEEEEECHHHCCC PLPNAWLGNMKQVNLVSEFGDSGFWNAFADGVEDIEIREGELYIKLKP CCCCHHHCCCHHHHHHHHCCCCCCHHHHHCCCCCEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA