| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is folE
Identifier: 119773463
GI number: 119773463
Start: 389155
End: 389805
Strand: Reverse
Name: folE
Synonym: Sama_0322
Alternate gene names: 119773463
Gene position: 389805-389155 (Counterclockwise)
Preceding gene: 119773464
Following gene: 119773460
Centisome position: 9.05
GC content: 55.76
Gene sequence:
>651_bases ATGGCACTCAGCGAAGCAGCACAAAAGGTTCAGGCGGCGCTCTTGGAGCGGGGGCTGGAAACTCCCATGGTTCCCTGCGG ACTCTCCCGCGAGGAACGCAAAGACAAAATCGAACAGCATATGCGGGCAATTCTTGGCCTGATGTCACTCGATTTGACCG ACGACAGCCTTGCCGATACCCCCCGTCGCATCGCCAAAATGTACGTGGATGAAATCTTCTCTGGCCTCGACTACGAGAAC TTCCCCAAAATCACTGTCATCGACAACAAGATGGGCGTGGATGAAATGGTACGGGTACAGGATATCAGCCTGACCAGCAC CTGCGAACACCATTTGGTGACCATAGACGGCACTGCCACAGTGGCCTATCTGCCGCGTAAAAAAATCATCGGCCTGTCGA AAATCAACCGTATCGTGCGCTTCTTTGCCCAGCGCCCTCAGGTGCAGGAACGCCTGACTCAACAGGTTCTGGTGGCACTG CAGGCACTGCTGGAAACCAAAGATGTGGCGGTGAAAATCGATGCGGTGCACTACTGCGTTAAATCCCGCGGCGTGATGGA TGCCACCAGCTCCACCACCACCACGGCACTGGGTGGCATTTTCAAATCCAACCCGGCCACCCGGGCGGAATTTTTACATC AGCCCCGCTGA
Upstream 100 bases:
>100_bases CGCCAAATAGCGGTATCCTGCGCCACTCGCGCAATACCCAAGTAATTTGCCCTGATATTGCGCAGCGGCCAAGGCGCCGA TGATGTGGTTGGAGGTAAAA
Downstream 100 bases:
>100_bases ACTTAAGCGTATTCCCAATAAAAAACGCCGCTGATTGCGGCGTTTTTTATGCTTAAGCCAAGGGCCCAAACTGGCGGGCG CTTACCTTTTATGGCTTGGG
Product: GTP cyclohydrolase I
Products: NA
Alternate protein names: GTP cyclohydrolase I; GTP-CH-I
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MALSEAAQKVQAALLERGLETPMVPCGLSREERKDKIEQHMRAILGLMSLDLTDDSLADTPRRIAKMYVDEIFSGLDYEN FPKITVIDNKMGVDEMVRVQDISLTSTCEHHLVTIDGTATVAYLPRKKIIGLSKINRIVRFFAQRPQVQERLTQQVLVAL QALLETKDVAVKIDAVHYCVKSRGVMDATSSTTTTALGGIFKSNPATRAEFLHQPR
Sequences:
>Translated_216_residues MALSEAAQKVQAALLERGLETPMVPCGLSREERKDKIEQHMRAILGLMSLDLTDDSLADTPRRIAKMYVDEIFSGLDYEN FPKITVIDNKMGVDEMVRVQDISLTSTCEHHLVTIDGTATVAYLPRKKIIGLSKINRIVRFFAQRPQVQERLTQQVLVAL QALLETKDVAVKIDAVHYCVKSRGVMDATSSTTTTALGGIFKSNPATRAEFLHQPR >Mature_215_residues ALSEAAQKVQAALLERGLETPMVPCGLSREERKDKIEQHMRAILGLMSLDLTDDSLADTPRRIAKMYVDEIFSGLDYENF PKITVIDNKMGVDEMVRVQDISLTSTCEHHLVTIDGTATVAYLPRKKIIGLSKINRIVRFFAQRPQVQERLTQQVLVALQ ALLETKDVAVKIDAVHYCVKSRGVMDATSSTTTTALGGIFKSNPATRAEFLHQPR
Specific function: Tetrahydrofolate biosynthesis; first step. [C]
COG id: COG0302
COG function: function code H; GTP cyclohydrolase I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP cyclohydrolase I family
Homologues:
Organism=Homo sapiens, GI66932968, Length=119, Percent_Identity=47.8991596638655, Blast_Score=121, Evalue=4e-28, Organism=Homo sapiens, GI4503949, Length=119, Percent_Identity=47.8991596638655, Blast_Score=121, Evalue=4e-28, Organism=Homo sapiens, GI66932970, Length=98, Percent_Identity=44.8979591836735, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI66932972, Length=82, Percent_Identity=50, Blast_Score=87, Evalue=1e-17, Organism=Escherichia coli, GI1788476, Length=217, Percent_Identity=68.6635944700461, Blast_Score=288, Evalue=2e-79, Organism=Caenorhabditis elegans, GI17560486, Length=174, Percent_Identity=40.8045977011494, Blast_Score=126, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6321706, Length=182, Percent_Identity=40.1098901098901, Blast_Score=126, Evalue=3e-30, Organism=Drosophila melanogaster, GI24656782, Length=187, Percent_Identity=40.1069518716578, Blast_Score=117, Evalue=5e-27, Organism=Drosophila melanogaster, GI24656796, Length=187, Percent_Identity=40.1069518716578, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI24656791, Length=187, Percent_Identity=40.1069518716578, Blast_Score=117, Evalue=7e-27,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): GCH1_SHEAM (A1S2C7)
Other databases:
- EMBL: CP000507 - RefSeq: YP_926203.1 - ProteinModelPortal: A1S2C7 - SMR: A1S2C7 - STRING: A1S2C7 - GeneID: 4602578 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_0322 - NMPDR: fig|326297.7.peg.307 - eggNOG: COG0302 - HOGENOM: HBG370191 - OMA: MAPIIGR - PhylomeDB: A1S2C7 - ProtClustDB: PRK09347 - GO: GO:0005737 - HAMAP: MF_00223 - InterPro: IPR001474 - InterPro: IPR020602 - InterPro: IPR018234 - TIGRFAMs: TIGR00063
Pfam domain/function: PF01227 GTP_cyclohydroI
EC number: =3.5.4.16
Molecular weight: Translated: 24083; Mature: 23952
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00859 GTP_CYCLOHYDROL_1_1; PS00860 GTP_CYCLOHYDROL_1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSEAAQKVQAALLERGLETPMVPCGLSREERKDKIEQHMRAILGLMSLDLTDDSLADT CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH PRRIAKMYVDEIFSGLDYENFPKITVIDNKMGVDEMVRVQDISLTSTCEHHLVTIDGTAT HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHCCCCEEEEECCCEE VAYLPRKKIIGLSKINRIVRFFAQRPQVQERLTQQVLVALQALLETKDVAVKIDAVHYCV EEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHH KSRGVMDATSSTTTTALGGIFKSNPATRAEFLHQPR HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCC >Mature Secondary Structure ALSEAAQKVQAALLERGLETPMVPCGLSREERKDKIEQHMRAILGLMSLDLTDDSLADT CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH PRRIAKMYVDEIFSGLDYENFPKITVIDNKMGVDEMVRVQDISLTSTCEHHLVTIDGTAT HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHCCCCEEEEECCCEE VAYLPRKKIIGLSKINRIVRFFAQRPQVQERLTQQVLVALQALLETKDVAVKIDAVHYCV EEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHH KSRGVMDATSSTTTTALGGIFKSNPATRAEFLHQPR HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA