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The map label for this gene is intA [H]

Identifier: 119773459

GI number: 119773459

Start: 384813

End: 386360

Strand: Reverse

Name: intA [H]

Synonym: Sama_0318

Alternate gene names: 119773459

Gene position: 386360-384813 (Counterclockwise)

Preceding gene: 119773460

Following gene: 119773458

Centisome position: 8.97

GC content: 46.71

Gene sequence:

>1548_bases
ATGAACCACGCGCAGTTGATCAAAACCGCCGCAAGCCGCTCTGAACAAAAAGTGCGTGTTGCCGACAATTTGTATATAAA
GCCATTAAAGTCTGGTGTTGGCTCCTTCATCTACCGAGGCACCGTCGCAGGGAAAAGAATCGAAATAGTGCTTGGCCAAT
TCGGCAATGGCCCAGGGAAAATGTCTAAGTCAGACGCCAAAAACCAAGTTGCCGAGCTTCAAAGACAGGTAAAGGAAGGC
AAAAACCCCAAGCTTGAGATCAAGAAGCTAGCGGCAGCACTGCAAGACACGTTTGGCAGTGTTACTCAGGACTATTTTGA
GGGGTATTGCAGGACCATCGACCATCCAGGTAGACCGAGAGCCCTATACACAAATTATGTGGCTAAGACATTGGGCGAAT
TACCAGTTTCTTACATAACAAGAATAATGGTTCGTGACTTGGTCAATAGCATTGATGCTGGTGTGAAGCGGACAGCAAAC
ATCAATGTGCTTCGGTTGATAGATAAAATACTGGATCACGCTGTGGAGCTGGGCATGCTTGAAACCAACGTGGCTAAGGG
TATCAACCGCAAAAAAATTGGTGCGAAAGCAGAACCTCGAGAACGAAATTTGTCTTTTGAGGAAATTCCCATTGTGCTGG
CAATATTACGTGACCACGTATCGAGGGATAACTATCTGGCGTTTATCCTTTTGCTCATTCTTGGTGTGCGTAAAAATGAG
CTGCTACAAGCCAAGTGGACTGAATTTGATCTGGAAAAGCAAATATGGCTTCTCCCAAACGGTCGCAGCAAAACCAAAAA
ATCAATCGCAATTGCCATTCCCGAACCTCTCATGCCAATACTGCTGGAAGTGAAGGAGCGCAGTGGTAGCAGTGATTATT
TATTCCCAGCCCGCAGAAATGGCTCAAATGTACCTCATACAGGCAAAGACACCTTAAATACTGCTTTATCAAAACTCTTT
GGTAAGGAAAACAAGGGGAAAAAAAGCAGACCACTGCCTAATATATTCGAAGCAGCAGGCATTCCGCACTTCACAGTGCA
CGATTTAAGACGAACCTGTAGCAGTCGACTCAGCGAGCTGAGTGTCCCAGATGAGATTATTGAGAAAATCTTAAACCATA
CAAAAGCAGGCGTGAGGGGTACCTATAACCGTTATGACTGCCTCAAAGAGCGTCTGGAAGCGCAAACTAAGTTGTGTGAG
AAGCTGGGAATTGCTTCACTTCTTGTGACAGGTACAGATGCTGCTGTGGCTGAAGAAGTAAAAACAGAGGTCAACTCTGC
TGCAATACCAGCAACCATAGCAGCTCCAGCGCCAGTTCCAACGGCCGACGCTTCAACAGCCAAAGTAGCTGAGGCCACTA
CCACCAAAAAGGCGCTGTGCAAGAGTACAGATGATTCCAAACCAAGCCACCCTCAAGCTAACTGGCCTACTGGGCGCTCC
CCTATGCCCTTTTCATTTGCAGGCACGCAAGGTGTTACGAGCGGTCAATCCGTCTCATTAAACTCACTGCGGATTTCAGG
TGAAAATATCTCAGTGACCACAAGTTAG

Upstream 100 bases:

>100_bases
GGTCAAAGAGTTTGCGTCAGGAGTCGTAGCTTACTCCAAATTTTGCGGTGACTTATTGGTGACTTATGCTAAGCCAATTC
CTAGGTAAGATGAGTCAACA

Downstream 100 bases:

>100_bases
CTGTCTCACCGCACATAAGGGCAATGCAGGACGTTTGCTCTGCACAGCATGTGTGCTTGCAGCAAAAAACGGCACGTTTT
TGTGCGATAACAGCGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MNHAQLIKTAASRSEQKVRVADNLYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGKMSKSDAKNQVAELQRQVKEG
KNPKLEIKKLAAALQDTFGSVTQDYFEGYCRTIDHPGRPRALYTNYVAKTLGELPVSYITRIMVRDLVNSIDAGVKRTAN
INVLRLIDKILDHAVELGMLETNVAKGINRKKIGAKAEPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLILGVRKNE
LLQAKWTEFDLEKQIWLLPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYLFPARRNGSNVPHTGKDTLNTALSKLF
GKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCSSRLSELSVPDEIIEKILNHTKAGVRGTYNRYDCLKERLEAQTKLCE
KLGIASLLVTGTDAAVAEEVKTEVNSAAIPATIAAPAPVPTADASTAKVAEATTTKKALCKSTDDSKPSHPQANWPTGRS
PMPFSFAGTQGVTSGQSVSLNSLRISGENISVTTS

Sequences:

>Translated_515_residues
MNHAQLIKTAASRSEQKVRVADNLYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGKMSKSDAKNQVAELQRQVKEG
KNPKLEIKKLAAALQDTFGSVTQDYFEGYCRTIDHPGRPRALYTNYVAKTLGELPVSYITRIMVRDLVNSIDAGVKRTAN
INVLRLIDKILDHAVELGMLETNVAKGINRKKIGAKAEPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLILGVRKNE
LLQAKWTEFDLEKQIWLLPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYLFPARRNGSNVPHTGKDTLNTALSKLF
GKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCSSRLSELSVPDEIIEKILNHTKAGVRGTYNRYDCLKERLEAQTKLCE
KLGIASLLVTGTDAAVAEEVKTEVNSAAIPATIAAPAPVPTADASTAKVAEATTTKKALCKSTDDSKPSHPQANWPTGRS
PMPFSFAGTQGVTSGQSVSLNSLRISGENISVTTS
>Mature_515_residues
MNHAQLIKTAASRSEQKVRVADNLYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGKMSKSDAKNQVAELQRQVKEG
KNPKLEIKKLAAALQDTFGSVTQDYFEGYCRTIDHPGRPRALYTNYVAKTLGELPVSYITRIMVRDLVNSIDAGVKRTAN
INVLRLIDKILDHAVELGMLETNVAKGINRKKIGAKAEPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLILGVRKNE
LLQAKWTEFDLEKQIWLLPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYLFPARRNGSNVPHTGKDTLNTALSKLF
GKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCSSRLSELSVPDEIIEKILNHTKAGVRGTYNRYDCLKERLEAQTKLCE
KLGIASLLVTGTDAAVAEEVKTEVNSAAIPATIAAPAPVPTADASTAKVAEATTTKKALCKSTDDSKPSHPQANWPTGRS
PMPFSFAGTQGVTSGQSVSLNSLRISGENISVTTS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=393, Percent_Identity=24.9363867684478, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 56367; Mature: 56367

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHAQLIKTAASRSEQKVRVADNLYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGK
CCHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
MSKSDAKNQVAELQRQVKEGKNPKLEIKKLAAALQDTFGSVTQDYFEGYCRTIDHPGRPR
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ALYTNYVAKTLGELPVSYITRIMVRDLVNSIDAGVKRTANINVLRLIDKILDHAVELGML
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ETNVAKGINRKKIGAKAEPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLILGVRKNE
HHHHHHCCCHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH
LLQAKWTEFDLEKQIWLLPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYLFPARRN
HHHHHCCHHCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCC
GSNVPHTGKDTLNTALSKLFGKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCSSRLSEL
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHC
SVPDEIIEKILNHTKAGVRGTYNRYDCLKERLEAQTKLCEKLGIASLLVTGTDAAVAEEV
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEEECCHHHHHHHH
KTEVNSAAIPATIAAPAPVPTADASTAKVAEATTTKKALCKSTDDSKPSHPQANWPTGRS
HHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PMPFSFAGTQGVTSGQSVSLNSLRISGENISVTTS
CCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEECC
>Mature Secondary Structure
MNHAQLIKTAASRSEQKVRVADNLYIKPLKSGVGSFIYRGTVAGKRIEIVLGQFGNGPGK
CCHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
MSKSDAKNQVAELQRQVKEGKNPKLEIKKLAAALQDTFGSVTQDYFEGYCRTIDHPGRPR
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ALYTNYVAKTLGELPVSYITRIMVRDLVNSIDAGVKRTANINVLRLIDKILDHAVELGML
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ETNVAKGINRKKIGAKAEPRERNLSFEEIPIVLAILRDHVSRDNYLAFILLLILGVRKNE
HHHHHHCCCHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH
LLQAKWTEFDLEKQIWLLPNGRSKTKKSIAIAIPEPLMPILLEVKERSGSSDYLFPARRN
HHHHHCCHHCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCC
GSNVPHTGKDTLNTALSKLFGKENKGKKSRPLPNIFEAAGIPHFTVHDLRRTCSSRLSEL
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHC
SVPDEIIEKILNHTKAGVRGTYNRYDCLKERLEAQTKLCEKLGIASLLVTGTDAAVAEEV
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHEEEECCHHHHHHHH
KTEVNSAAIPATIAAPAPVPTADASTAKVAEATTTKKALCKSTDDSKPSHPQANWPTGRS
HHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PMPFSFAGTQGVTSGQSVSLNSLRISGENISVTTS
CCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]