| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773434
Identifier: 119773434
GI number: 119773434
Start: 349772
End: 352120
Strand: Reverse
Name: 119773434
Synonym: Sama_0293
Alternate gene names: NA
Gene position: 352120-349772 (Counterclockwise)
Preceding gene: 119773449
Following gene: 119773433
Centisome position: 8.18
GC content: 55.21
Gene sequence:
>2349_bases ATGATAAGGTCCAAGGTCTGTATTGCCGTCATAGGACTATCGCTGGTCGCATGCCAGACAAGCAATCACAGTGCTTCTCC CACACACGTCGCTGCCACACAACGAACCAATCTGGTCAGTCAGGAGCTGGTGCAGTACGTGAATCCCCTGATGGGAACAG ACTCCAAGTTCAGCCTTTCCAATGGCAATACCTACCCGGCAATAGCCACGCCATGGGCCATGCACTTTTGGAGCCCGATG ACGGCCCCCATGGGTGACGGTTGGACCTACAAGTACGACGACGATACCCTGCGCGGCATCAAACAGACTCATCAGCCCAG CCCCTGGCTCAATGATTATGGTGCCTTTTCCCTGATGGCTGTCACCGGGGCGCTCAAGTTTAAGGAAGACGAGCGCGCCT CCTGGTTTTCCCATAAGGCCGAAACCGTCAGCCCCGATCACTACTCTGTTTATCTGGCCGACTACGATGTCACCATGGAG GTGACGCCCACCGAGCGCGCCGCCCAGTTCCGCTTCACCTTCCCCGAGACCGAGCAGGCCTACATTCTGCTGGATGCCTT CAATAAAGGCTCCATGGTTCGCATCCTGCCGGAGCAGCGCAAAATTGTCGGTTATGCCCGCAATAACCACGGCGGCGTAC CCGACAACTTCCACAACTACTTTGTGATTGAGTTCGATAAAGAGTTCGAGCTGACCCACACCTGGCACGACGGATGGGCA CTGCAGCCAAACCAGTTGAGCAGTGAAGGTGAGCATGTGGGTGCCATCATTGGCTTTAAGACCCAGCGTGGCGAGCAGGT GCATGCCAAAGTCGCCTCCTCCTTCATCAGTCCGGAGCAGGCCGAAATCAACCTGCGCCGCGAGATTGGCGGGCAAAGCT TTACCGAGACCCAGACCGCAGCCAGACAAAGCTGGCAAAAGGAGCTGTCGCGTATTCGGGTCGAAGATCAGGACCTGGAT GAGGTAAAGACCTTTTACTCTGCCCTTTACCGGGTATTGCTGTTCCCACGCAAGTTTTACGAGTACGACGCCAACAATCA GCTGGTGCATTACAGCCCCTATAATGGCGAAGTCCTCCCCGGTTATATGTTTACCGACAATGGCTTCTGGGACACCTTCC GCGCCGTGTTCCCCTTCTTCACCCTGATGTATCCCGAGCTGGATGCCCAAATCATGGCGGGACTGGCCAACACCTATAAA GAGTCTGGTTGGTTGCCTGAATGGGCCAGCCCCGGCCACAGAAATGTGATGGTAGGTTCCAACTCAGCCATCAATATCGC CGATGCCTATTTAAAGGGCATTCGCGGATTTGATATCGATACCCTGTACGAGGCCGCCCGGAAAAACGCCGAAGTGAATG AGGGTCGCCCCATGACCTCCGTCGGCCGCGAAGGCGTGGATTACTACAACAAACTGGGCTACGTGCCCTATGACGTGGGC ATCCACGAAAATGCCGCCCGCACCCTGGAATATGCCTTTGCCGACTTCAATCTATACAAGCTGGCCAAGGCCCTTGGCAA GACTGAAGATGCCGAGCTGTTCAAACAGCGCGCCTATAACTATCGCCACCTGTTTGACACAGAGACCGGCTGGATGCGGG GTAAAAATCAGGACGGCAGCTTCCAGTCACCCTTCAACCCGCTGAAATGGGGTGATGCCTTTACCGAAGGCAACGCACTG CACTACAGCTGGTCGGTGTTTCACGATATTGAAGGCCTGAAGCAGCTCATGGGAGGCCAGCAGGGCTTTATCGACAAGCT GGATCAGGTATTCGATATGCCGCCGCTGTTTGATGATTCCTATTATGGTTTCACCATCCATGAAATCCGCGAGATGCAAA TCGTCAACATGGGCAACTACGCCCATGGCAATCAGCCTATCCAGCACATGATTTACCTCTACAATCACGCCGGTCAGCCC TGGAAGGCTCAGCAAAAAGTCCGTGACGTGATGAATCGTCTCTATTCGGCGACCCCGGACGGTTATTGCGGGGATGAGGA CAACGGCCAAACCTCGGCCTGGTACGTGTTCAGTGCACTGGGCTTTTATCCGGTCACACCGGGCACACCTGAGTATGTGA TTGGCAGCCCTCTGTTTGACAAGGTCACCCTGACGCTGGAAGACGGTAAAACCTTCGTTATCGAGTCAGACAACAACCTG AATGCCAACCCCTATATTCAGCAGGCCCTGCTCAATGGCAAGGCATTGAACCGGAGCTGGCTCGATCATCACGAGATCCA GGCCGGTGGCACCCTGAACTTCGACATGGGCGCCACCCCCAATAAAGCCTGGGCCAGCGATGCCAATGCCCAGCCTTACT CCATGTCGTTGGAAACAACGCGTCCCTAA
Upstream 100 bases:
>100_bases TAGACTGATCAAATGTAATCGATTACAGTGAGCCAAATCCCCCTACAAAGTCACAAGTGGGTAACATGCTTGTGACCGGA TAACCTGGAGACAGAAAATA
Downstream 100 bases:
>100_bases AAAGAGGACGCGGCTGCGTCCTTCGACACACGAGAACCACTATGGCAATCATTCCATCAACACCAGCACAGGGCGCACAG GGTAAAAGCAGCCACTTTGC
Product: putative alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Sugar Hydrolase; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Cell Wall Antigen; Glycosyl Hydrolase; Exported Alpha-1 2-Mannosidase; Antigen; Glycosyltransferase; Alpha-1 2-Mannosidase Protein; Mannosidase
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLSNGNTYPAIATPWAMHFWSPM TAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMAVTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTME VTPTERAAQFRFTFPETEQAYILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTAARQSWQKELSRIRVEDQDLD EVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLPGYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYK ESGWLPEWASPGHRNVMVGSNSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGSFQSPFNPLKWGDAFTEGNAL HYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDSYYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQP WKAQQKVRDVMNRLYSATPDGYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETTRP
Sequences:
>Translated_782_residues MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLSNGNTYPAIATPWAMHFWSPM TAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMAVTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTME VTPTERAAQFRFTFPETEQAYILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTAARQSWQKELSRIRVEDQDLD EVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLPGYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYK ESGWLPEWASPGHRNVMVGSNSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGSFQSPFNPLKWGDAFTEGNAL HYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDSYYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQP WKAQQKVRDVMNRLYSATPDGYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETTRP >Mature_782_residues MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLSNGNTYPAIATPWAMHFWSPM TAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMAVTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTME VTPTERAAQFRFTFPETEQAYILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTAARQSWQKELSRIRVEDQDLD EVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLPGYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYK ESGWLPEWASPGHRNVMVGSNSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGSFQSPFNPLKWGDAFTEGNAL HYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDSYYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQP WKAQQKVRDVMNRLYSATPDGYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETTRP
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88721; Mature: 88721
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLS CCCCHHHHHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEC NGNTYPAIATPWAMHFWSPMTAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMA CCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCEEEH VTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTMEVTPTERAAQFRFTFPETEQA HHHHHEECCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCCCE YILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA EEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCC LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTA CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHEEEHHHCCCCCCHHHHHH ARQSWQKELSRIRVEDQDLDEVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLP HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHEECCCCCEEEECCCCCCEEC GYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYKESGWLPEWASPGHRNVMVGS CEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC NSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG CCCEEHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHCCCCEEECC IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGS CCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC FQSPFNPLKWGDAFTEGNALHYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDS CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC YYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQPWKAQQKVRDVMNRLYSATPD CCCEEHHHHCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC GYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL CCCCCCCCCCCHHEEEEECCCCEECCCCCCCEEECCCCCCEEEEEEECCCEEEEECCCCC NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETT CCCHHHHHHHHCCCCCCCHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC RP CC >Mature Secondary Structure MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLS CCCCHHHHHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEC NGNTYPAIATPWAMHFWSPMTAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMA CCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCEEEH VTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTMEVTPTERAAQFRFTFPETEQA HHHHHEECCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCCCE YILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA EEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCC LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTA CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHEEEHHHCCCCCCHHHHHH ARQSWQKELSRIRVEDQDLDEVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLP HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHEECCCCCEEEECCCCCCEEC GYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYKESGWLPEWASPGHRNVMVGS CEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC NSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG CCCEEHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHCCCCEEECC IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGS CCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC FQSPFNPLKWGDAFTEGNALHYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDS CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC YYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQPWKAQQKVRDVMNRLYSATPD CCCEEHHHHCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC GYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL CCCCCCCCCCCHHEEEEECCCCEECCCCCCCEEECCCCCCEEEEEEECCCEEEEECCCCC NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETT CCCHHHHHHHHCCCCCCCHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC RP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA