Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773434

Identifier: 119773434

GI number: 119773434

Start: 349772

End: 352120

Strand: Reverse

Name: 119773434

Synonym: Sama_0293

Alternate gene names: NA

Gene position: 352120-349772 (Counterclockwise)

Preceding gene: 119773449

Following gene: 119773433

Centisome position: 8.18

GC content: 55.21

Gene sequence:

>2349_bases
ATGATAAGGTCCAAGGTCTGTATTGCCGTCATAGGACTATCGCTGGTCGCATGCCAGACAAGCAATCACAGTGCTTCTCC
CACACACGTCGCTGCCACACAACGAACCAATCTGGTCAGTCAGGAGCTGGTGCAGTACGTGAATCCCCTGATGGGAACAG
ACTCCAAGTTCAGCCTTTCCAATGGCAATACCTACCCGGCAATAGCCACGCCATGGGCCATGCACTTTTGGAGCCCGATG
ACGGCCCCCATGGGTGACGGTTGGACCTACAAGTACGACGACGATACCCTGCGCGGCATCAAACAGACTCATCAGCCCAG
CCCCTGGCTCAATGATTATGGTGCCTTTTCCCTGATGGCTGTCACCGGGGCGCTCAAGTTTAAGGAAGACGAGCGCGCCT
CCTGGTTTTCCCATAAGGCCGAAACCGTCAGCCCCGATCACTACTCTGTTTATCTGGCCGACTACGATGTCACCATGGAG
GTGACGCCCACCGAGCGCGCCGCCCAGTTCCGCTTCACCTTCCCCGAGACCGAGCAGGCCTACATTCTGCTGGATGCCTT
CAATAAAGGCTCCATGGTTCGCATCCTGCCGGAGCAGCGCAAAATTGTCGGTTATGCCCGCAATAACCACGGCGGCGTAC
CCGACAACTTCCACAACTACTTTGTGATTGAGTTCGATAAAGAGTTCGAGCTGACCCACACCTGGCACGACGGATGGGCA
CTGCAGCCAAACCAGTTGAGCAGTGAAGGTGAGCATGTGGGTGCCATCATTGGCTTTAAGACCCAGCGTGGCGAGCAGGT
GCATGCCAAAGTCGCCTCCTCCTTCATCAGTCCGGAGCAGGCCGAAATCAACCTGCGCCGCGAGATTGGCGGGCAAAGCT
TTACCGAGACCCAGACCGCAGCCAGACAAAGCTGGCAAAAGGAGCTGTCGCGTATTCGGGTCGAAGATCAGGACCTGGAT
GAGGTAAAGACCTTTTACTCTGCCCTTTACCGGGTATTGCTGTTCCCACGCAAGTTTTACGAGTACGACGCCAACAATCA
GCTGGTGCATTACAGCCCCTATAATGGCGAAGTCCTCCCCGGTTATATGTTTACCGACAATGGCTTCTGGGACACCTTCC
GCGCCGTGTTCCCCTTCTTCACCCTGATGTATCCCGAGCTGGATGCCCAAATCATGGCGGGACTGGCCAACACCTATAAA
GAGTCTGGTTGGTTGCCTGAATGGGCCAGCCCCGGCCACAGAAATGTGATGGTAGGTTCCAACTCAGCCATCAATATCGC
CGATGCCTATTTAAAGGGCATTCGCGGATTTGATATCGATACCCTGTACGAGGCCGCCCGGAAAAACGCCGAAGTGAATG
AGGGTCGCCCCATGACCTCCGTCGGCCGCGAAGGCGTGGATTACTACAACAAACTGGGCTACGTGCCCTATGACGTGGGC
ATCCACGAAAATGCCGCCCGCACCCTGGAATATGCCTTTGCCGACTTCAATCTATACAAGCTGGCCAAGGCCCTTGGCAA
GACTGAAGATGCCGAGCTGTTCAAACAGCGCGCCTATAACTATCGCCACCTGTTTGACACAGAGACCGGCTGGATGCGGG
GTAAAAATCAGGACGGCAGCTTCCAGTCACCCTTCAACCCGCTGAAATGGGGTGATGCCTTTACCGAAGGCAACGCACTG
CACTACAGCTGGTCGGTGTTTCACGATATTGAAGGCCTGAAGCAGCTCATGGGAGGCCAGCAGGGCTTTATCGACAAGCT
GGATCAGGTATTCGATATGCCGCCGCTGTTTGATGATTCCTATTATGGTTTCACCATCCATGAAATCCGCGAGATGCAAA
TCGTCAACATGGGCAACTACGCCCATGGCAATCAGCCTATCCAGCACATGATTTACCTCTACAATCACGCCGGTCAGCCC
TGGAAGGCTCAGCAAAAAGTCCGTGACGTGATGAATCGTCTCTATTCGGCGACCCCGGACGGTTATTGCGGGGATGAGGA
CAACGGCCAAACCTCGGCCTGGTACGTGTTCAGTGCACTGGGCTTTTATCCGGTCACACCGGGCACACCTGAGTATGTGA
TTGGCAGCCCTCTGTTTGACAAGGTCACCCTGACGCTGGAAGACGGTAAAACCTTCGTTATCGAGTCAGACAACAACCTG
AATGCCAACCCCTATATTCAGCAGGCCCTGCTCAATGGCAAGGCATTGAACCGGAGCTGGCTCGATCATCACGAGATCCA
GGCCGGTGGCACCCTGAACTTCGACATGGGCGCCACCCCCAATAAAGCCTGGGCCAGCGATGCCAATGCCCAGCCTTACT
CCATGTCGTTGGAAACAACGCGTCCCTAA

Upstream 100 bases:

>100_bases
TAGACTGATCAAATGTAATCGATTACAGTGAGCCAAATCCCCCTACAAAGTCACAAGTGGGTAACATGCTTGTGACCGGA
TAACCTGGAGACAGAAAATA

Downstream 100 bases:

>100_bases
AAAGAGGACGCGGCTGCGTCCTTCGACACACGAGAACCACTATGGCAATCATTCCATCAACACCAGCACAGGGCGCACAG
GGTAAAAGCAGCCACTTTGC

Product: putative alpha-1,2-mannosidase

Products: NA

Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Sugar Hydrolase; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Immunoreactive; Cell Wall Antigen; Glycosyl Hydrolase; Exported Alpha-1 2-Mannosidase; Antigen; Glycosyltransferase; Alpha-1 2-Mannosidase Protein; Mannosidase

Number of amino acids: Translated: 782; Mature: 782

Protein sequence:

>782_residues
MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLSNGNTYPAIATPWAMHFWSPM
TAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMAVTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTME
VTPTERAAQFRFTFPETEQAYILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA
LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTAARQSWQKELSRIRVEDQDLD
EVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLPGYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYK
ESGWLPEWASPGHRNVMVGSNSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG
IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGSFQSPFNPLKWGDAFTEGNAL
HYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDSYYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQP
WKAQQKVRDVMNRLYSATPDGYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL
NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETTRP

Sequences:

>Translated_782_residues
MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLSNGNTYPAIATPWAMHFWSPM
TAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMAVTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTME
VTPTERAAQFRFTFPETEQAYILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA
LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTAARQSWQKELSRIRVEDQDLD
EVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLPGYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYK
ESGWLPEWASPGHRNVMVGSNSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG
IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGSFQSPFNPLKWGDAFTEGNAL
HYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDSYYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQP
WKAQQKVRDVMNRLYSATPDGYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL
NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETTRP
>Mature_782_residues
MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLSNGNTYPAIATPWAMHFWSPM
TAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMAVTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTME
VTPTERAAQFRFTFPETEQAYILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA
LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTAARQSWQKELSRIRVEDQDLD
EVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLPGYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYK
ESGWLPEWASPGHRNVMVGSNSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG
IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGSFQSPFNPLKWGDAFTEGNAL
HYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDSYYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQP
WKAQQKVRDVMNRLYSATPDGYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL
NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETTRP

Specific function: Unknown

COG id: COG3537

COG function: function code G; Putative alpha-1,2-mannosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 88721; Mature: 88721

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLS
CCCCHHHHHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
NGNTYPAIATPWAMHFWSPMTAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMA
CCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCEEEH
VTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTMEVTPTERAAQFRFTFPETEQA
HHHHHEECCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCCCE
YILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA
EEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCC
LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTA
CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHEEEHHHCCCCCCHHHHHH
ARQSWQKELSRIRVEDQDLDEVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHEECCCCCEEEECCCCCCEEC
GYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYKESGWLPEWASPGHRNVMVGS
CEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC
NSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG
CCCEEHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHCCCCEEECC
IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGS
CCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
FQSPFNPLKWGDAFTEGNALHYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDS
CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
YYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQPWKAQQKVRDVMNRLYSATPD
CCCEEHHHHCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
GYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL
CCCCCCCCCCCHHEEEEECCCCEECCCCCCCEEECCCCCCEEEEEEECCCEEEEECCCCC
NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETT
CCCHHHHHHHHCCCCCCCHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC
RP
CC
>Mature Secondary Structure
MIRSKVCIAVIGLSLVACQTSNHSASPTHVAATQRTNLVSQELVQYVNPLMGTDSKFSLS
CCCCHHHHHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
NGNTYPAIATPWAMHFWSPMTAPMGDGWTYKYDDDTLRGIKQTHQPSPWLNDYGAFSLMA
CCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCEEEH
VTGALKFKEDERASWFSHKAETVSPDHYSVYLADYDVTMEVTPTERAAQFRFTFPETEQA
HHHHHEECCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEECCCCCCE
YILLDAFNKGSMVRILPEQRKIVGYARNNHGGVPDNFHNYFVIEFDKEFELTHTWHDGWA
EEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEECCCCC
LQPNQLSSEGEHVGAIIGFKTQRGEQVHAKVASSFISPEQAEINLRREIGGQSFTETQTA
CCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHEEEHHHCCCCCCHHHHHH
ARQSWQKELSRIRVEDQDLDEVKTFYSALYRVLLFPRKFYEYDANNQLVHYSPYNGEVLP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHEECCCCCEEEECCCCCCEEC
GYMFTDNGFWDTFRAVFPFFTLMYPELDAQIMAGLANTYKESGWLPEWASPGHRNVMVGS
CEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC
NSAINIADAYLKGIRGFDIDTLYEAARKNAEVNEGRPMTSVGREGVDYYNKLGYVPYDVG
CCCEEHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHCCCCEEECC
IHENAARTLEYAFADFNLYKLAKALGKTEDAELFKQRAYNYRHLFDTETGWMRGKNQDGS
CCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC
FQSPFNPLKWGDAFTEGNALHYSWSVFHDIEGLKQLMGGQQGFIDKLDQVFDMPPLFDDS
CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
YYGFTIHEIREMQIVNMGNYAHGNQPIQHMIYLYNHAGQPWKAQQKVRDVMNRLYSATPD
CCCEEHHHHCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
GYCGDEDNGQTSAWYVFSALGFYPVTPGTPEYVIGSPLFDKVTLTLEDGKTFVIESDNNL
CCCCCCCCCCCHHEEEEECCCCEECCCCCCCEEECCCCCCEEEEEEECCCEEEEECCCCC
NANPYIQQALLNGKALNRSWLDHHEIQAGGTLNFDMGATPNKAWASDANAQPYSMSLETT
CCCHHHHHHHHCCCCCCCHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCC
RP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA