Click here to switch to the map view.

The map label for this gene is yihS [H]

Identifier: 119773431

GI number: 119773431

Start: 346298

End: 347485

Strand: Reverse

Name: yihS [H]

Synonym: Sama_0290

Alternate gene names: 119773431

Gene position: 347485-346298 (Counterclockwise)

Preceding gene: 119773432

Following gene: 119773430

Centisome position: 8.07

GC content: 55.3

Gene sequence:

>1188_bases
ATGAACTTTTTCTCCCAGACATTTCTTCTTGAACACTGCCAGAGCATTTTGGATTTCTACACCGACCGGGTAGTGGATCC
AAGCGGCGGCTATCACCAGAACTTTCTCGACGACGGCAGCCTGTTTGATACCCATTTCAAACAGCTGGTAAGCAGCACCC
GCATTCTGGTGAACTATGCCACTGCCGGTATCCTGTTTGGTCGTCAGGATTATCTGGATATTGCCAGGCATGGCCTGGAT
TATCTGGAAGAAGTGCACTGGCAGGCGTCCAGTCAAACCTACGCCTGGACCCTGGATAACCACAAGCCGCTGGACATGAC
CCAGCAGGCCTATGGTTATGCCTTTGTGCTGCTGGCCTATGCTGCGGCTCGCAAGGCAGACCTGGTGCAGGACGACAGCA
AACTGCAACAGGTATACGACTTACTGGAGCAGCGTTTCTGGCAAGCTGAATATGGCCTCTATGCCGATGAAATCAGCCCC
GAGGGCGTGCTCAGTCCCTATCGCGGCCAAAATGCCAACATGCACCTGTGTGAAGCCATGCTGGCGGCCTTTGAAGCCAC
GGGTAACAACCAGTATCTGGAGCGTGCTTCCCAACTGGCCCAGAGTATTGCCGTGCGTCAGGCGTCACTGACAAACGATT
TGGTGTGGGAACATTACACCCCCGAGTTCAAACCAGACTGGGATTACAACAGAGACGACCCCAAAAACCTTTATCGTCCC
TGGGGCTTTCAGCCCGGGCATCAGACCGAGTGGGCGAAACTGCTGCTGATCCTCAATCGTCATGCGCCGCAGGCCTGGCA
GATTGAACGCGCAGCGTCCCTGTTTGACCGCGCTTATCAACAAGCCTGGGACAATCAGGACGGTGGCCTCGTCTATGGGT
TTGATCCCGAGGGCAACTGGTGTGACGATGACAAGTACTTCTGGGTACAGGCCGAAAGCTTCGCCGCTGCCGCCATGTTG
CATAAAGCGACGGGTGACGATAAGTACCTGACCCAGTATGACGCCCTGTGGCAGTACAGCTGGGCCCACATGGTGGACCA
TGAATACGGCGCCTGGTTCAGGGTACTGAGAAAGGACAACAGCAAGTATTCCAATCAGAAAAGTGCCGCCGGGGCCAAGT
GTGACTATCACACCCTGGGAGCCTGCTTCGAAGTCTTGCGCGTGCTGGGCCACCCGGCACTGAAATAA

Upstream 100 bases:

>100_bases
CCTTCCCGGCCCTGCCGGGGCTGGCCGATATCCAGACACAAGTGACCCAGCAGGGGCACTCAATTGCTGCCTTTAACCCT
GTTTTATTCCGGAGCCCGGT

Downstream 100 bases:

>100_bases
ACCGACCATAAGGCCCGTGGATGCGGGCCTTTGCTTACCTGACTCCATGAGGATGTGATGAAAAAGATTGCCGCACTGCT
GCTGACCGCGTCCCTGGCAG

Product: N-acylglucosamine 2-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNFFSQTFLLEHCQSILDFYTDRVVDPSGGYHQNFLDDGSLFDTHFKQLVSSTRILVNYATAGILFGRQDYLDIARHGLD
YLEEVHWQASSQTYAWTLDNHKPLDMTQQAYGYAFVLLAYAAARKADLVQDDSKLQQVYDLLEQRFWQAEYGLYADEISP
EGVLSPYRGQNANMHLCEAMLAAFEATGNNQYLERASQLAQSIAVRQASLTNDLVWEHYTPEFKPDWDYNRDDPKNLYRP
WGFQPGHQTEWAKLLLILNRHAPQAWQIERAASLFDRAYQQAWDNQDGGLVYGFDPEGNWCDDDKYFWVQAESFAAAAML
HKATGDDKYLTQYDALWQYSWAHMVDHEYGAWFRVLRKDNSKYSNQKSAAGAKCDYHTLGACFEVLRVLGHPALK

Sequences:

>Translated_395_residues
MNFFSQTFLLEHCQSILDFYTDRVVDPSGGYHQNFLDDGSLFDTHFKQLVSSTRILVNYATAGILFGRQDYLDIARHGLD
YLEEVHWQASSQTYAWTLDNHKPLDMTQQAYGYAFVLLAYAAARKADLVQDDSKLQQVYDLLEQRFWQAEYGLYADEISP
EGVLSPYRGQNANMHLCEAMLAAFEATGNNQYLERASQLAQSIAVRQASLTNDLVWEHYTPEFKPDWDYNRDDPKNLYRP
WGFQPGHQTEWAKLLLILNRHAPQAWQIERAASLFDRAYQQAWDNQDGGLVYGFDPEGNWCDDDKYFWVQAESFAAAAML
HKATGDDKYLTQYDALWQYSWAHMVDHEYGAWFRVLRKDNSKYSNQKSAAGAKCDYHTLGACFEVLRVLGHPALK
>Mature_395_residues
MNFFSQTFLLEHCQSILDFYTDRVVDPSGGYHQNFLDDGSLFDTHFKQLVSSTRILVNYATAGILFGRQDYLDIARHGLD
YLEEVHWQASSQTYAWTLDNHKPLDMTQQAYGYAFVLLAYAAARKADLVQDDSKLQQVYDLLEQRFWQAEYGLYADEISP
EGVLSPYRGQNANMHLCEAMLAAFEATGNNQYLERASQLAQSIAVRQASLTNDLVWEHYTPEFKPDWDYNRDDPKNLYRP
WGFQPGHQTEWAKLLLILNRHAPQAWQIERAASLFDRAYQQAWDNQDGGLVYGFDPEGNWCDDDKYFWVQAESFAAAAML
HKATGDDKYLTQYDALWQYSWAHMVDHEYGAWFRVLRKDNSKYSNQKSAAGAKCDYHTLGACFEVLRVLGHPALK

Specific function: Unknown

COG id: COG2942

COG function: function code G; N-acyl-D-glucosamine 2-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acylglucosamine 2-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082342, Length=396, Percent_Identity=28.030303030303, Blast_Score=147, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR012341
- InterPro:   IPR010819 [H]

Pfam domain/function: PF07221 GlcNAc_2-epim [H]

EC number: 5.-.-.- [C]

Molecular weight: Translated: 45658; Mature: 45658

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure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CHHCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]