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The map label for this gene is rbpD [H]

Identifier: 119773336

GI number: 119773336

Start: 223340

End: 223795

Strand: Reverse

Name: rbpD [H]

Synonym: Sama_0195

Alternate gene names: 119773336

Gene position: 223795-223340 (Counterclockwise)

Preceding gene: 119773339

Following gene: 119773334

Centisome position: 5.2

GC content: 49.34

Gene sequence:

>456_bases
ATGCAGAAATCATTTCTTATTGCGCTGATAGCCGCCGCAGTGGGTGCCTTGGTCATTTTTCAGTTTCTACCCACCTTCCC
TGCTTATCTTGCCTTTATTCTAGGTGCTGTGCTGGCCTTAGGTATTTGCGCCATTGCGCCTTCCGGTAACAATGCTGCCA
CCGTCGAAACAGATTATACCGGCCCAACAATGACGCTTTATGTGGGTAACCTGCCATACCGGGTGCATGAAGGTGACGTA
AAGTCTCTGTTTGCCGAGTATGGACCGGTTAATTCAGTCCGATTGGTTCGCGACCGCAAGACCGGTAGACGCAAAGGCTT
CGGTTTCGTTGAGATGTCTGAGAGTGGTGCCCAGAAGGCGATGGTCAAGTTGAATGACTACACCTTCCAGGAAAGGACAT
TAAAAGTAAGAGAAGCCAAGAATCAGGACAATGAGTCTGAGAAGTCTGACGACTGA

Upstream 100 bases:

>100_bases
TTCTACAGCGATCTGGTTTAATCTCAGATAATTCATTACTATATACCTGCTGTTAACAGTTATTTATCATTTCCTTATTT
TCATCAGAGTAAATTTGCTT

Downstream 100 bases:

>100_bases
GTCTTGGTTCAATGGGTAAAAGGCGCTATTTCGCTGAATCCATAGTCTGTCAGGCTTTGGATTAAGCCCAGTGTCAGTGA
AGGCGTGGTATACCACGCCT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MQKSFLIALIAAAVGALVIFQFLPTFPAYLAFILGAVLALGICAIAPSGNNAATVETDYTGPTMTLYVGNLPYRVHEGDV
KSLFAEYGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKAMVKLNDYTFQERTLKVREAKNQDNESEKSDD

Sequences:

>Translated_151_residues
MQKSFLIALIAAAVGALVIFQFLPTFPAYLAFILGAVLALGICAIAPSGNNAATVETDYTGPTMTLYVGNLPYRVHEGDV
KSLFAEYGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKAMVKLNDYTFQERTLKVREAKNQDNESEKSDD
>Mature_151_residues
MQKSFLIALIAAAVGALVIFQFLPTFPAYLAFILGAVLALGICAIAPSGNNAATVETDYTGPTMTLYVGNLPYRVHEGDV
KSLFAEYGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKAMVKLNDYTFQERTLKVREAKNQDNESEKSDD

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=84, Percent_Identity=44.047619047619, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI14149675, Length=84, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=48.7179487179487, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=42.6829268292683, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=74, Percent_Identity=41.8918918918919, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=39.4736842105263, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17137710, Length=84, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 16531; Mature: 16531

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSFLIALIAAAVGALVIFQFLPTFPAYLAFILGAVLALGICAIAPSGNNAATVETDYT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GPTMTLYVGNLPYRVHEGDVKSLFAEYGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKA
CCEEEEEECCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHH
MVKLNDYTFQERTLKVREAKNQDNESEKSDD
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQKSFLIALIAAAVGALVIFQFLPTFPAYLAFILGAVLALGICAIAPSGNNAATVETDYT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GPTMTLYVGNLPYRVHEGDVKSLFAEYGPVNSVRLVRDRKTGRRKGFGFVEMSESGAQKA
CCEEEEEECCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCHHH
MVKLNDYTFQERTLKVREAKNQDNESEKSDD
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]