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The map label for this gene is fabR [H]

Identifier: 119773333

GI number: 119773333

Start: 220651

End: 221265

Strand: Direct

Name: fabR [H]

Synonym: Sama_0192

Alternate gene names: 119773333

Gene position: 220651-221265 (Clockwise)

Preceding gene: 119773329

Following gene: 119773335

Centisome position: 5.12

GC content: 55.12

Gene sequence:

>615_bases
ATGGGAGTTAGAGCACAGCAGAAAGAGAAGACCCGTCGTGCCTTGGTGGACGCGGCCTTCAATCAGCTCAGTGCCGAGCG
CAGTTTTTCCAGCTTGAGCCTGCGGGAAGTTGCCCGGGAGGCCAGCATTGCGCCCACTTCTTTCTACCGCCATTTCAAGG
ATATGAATGAGTTGGGGCTTACCATGGTGGATGAAGGCGGCCTGGCGCTGCGGCAGATGATGCGTAAAGGGCGTCAGCGT
GCCGAAGCGGGTGGCAGTGTAATTCGCATTTCCGTCGATACCTTTATGGAAGTTCTCGACTCCAATCCCAACGTATTCCG
TATCCTGCTGCACGAGCGTTCCGGTACTTCTGCGCCGTTCCGTGCCGCTGTGGCCAGAGAGATTGAACACTTTATTTCTG
AGCTTGCCCATTACACCGAGGAAAAGGCCAAACGCAGCCCGGAACTGGCCAGAGCCCAGGCCGAATCCATGGTTACTCTG
GTGTTTAACGCAGGTGCTGCGGCGCTGGATATGAAAAAGTCTGAGCGCAAGATCCTGGCTGACCAGCTGGTATTACAGCT
GCGTATGGTGGCCAAAGGGGCTGAGTTTTTGCAGCAAAAGGTCGATGCAAAATAA

Upstream 100 bases:

>100_bases
ATTTAGACGAGCTGATGACCAAGGTCAAGGAAGGCGGGGCTGTGTTTTAGGGGCAAAAGGGTTATTATCCCGTGAATCAG
TAAGATGAACGGAATATCAC

Downstream 100 bases:

>100_bases
AAAACGGAGCCTAAGGCTCCGTTTTTTATGTAATGATTGCCAGTATCAGCGGCGTTTAAGCATCACGCCGGCTTCTGTGT
GATGGGTATAAGGGAACTGA

Product: DNA-binding transcriptional repressor FabR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MGVRAQQKEKTRRALVDAAFNQLSAERSFSSLSLREVAREASIAPTSFYRHFKDMNELGLTMVDEGGLALRQMMRKGRQR
AEAGGSVIRISVDTFMEVLDSNPNVFRILLHERSGTSAPFRAAVAREIEHFISELAHYTEEKAKRSPELARAQAESMVTL
VFNAGAAALDMKKSERKILADQLVLQLRMVAKGAEFLQQKVDAK

Sequences:

>Translated_204_residues
MGVRAQQKEKTRRALVDAAFNQLSAERSFSSLSLREVAREASIAPTSFYRHFKDMNELGLTMVDEGGLALRQMMRKGRQR
AEAGGSVIRISVDTFMEVLDSNPNVFRILLHERSGTSAPFRAAVAREIEHFISELAHYTEEKAKRSPELARAQAESMVTL
VFNAGAAALDMKKSERKILADQLVLQLRMVAKGAEFLQQKVDAK
>Mature_203_residues
GVRAQQKEKTRRALVDAAFNQLSAERSFSSLSLREVAREASIAPTSFYRHFKDMNELGLTMVDEGGLALRQMMRKGRQRA
EAGGSVIRISVDTFMEVLDSNPNVFRILLHERSGTSAPFRAAVAREIEHFISELAHYTEEKAKRSPELARAQAESMVTLV
FNAGAAALDMKKSERKILADQLVLQLRMVAKGAEFLQQKVDAK

Specific function: Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, fabR directly influences the physical properties of the membrane bilayer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693209, Length=200, Percent_Identity=68.5, Blast_Score=275, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22798; Mature: 22666

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVRAQQKEKTRRALVDAAFNQLSAERSFSSLSLREVAREASIAPTSFYRHFKDMNELGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
TMVDEGGLALRQMMRKGRQRAEAGGSVIRISVDTFMEVLDSNPNVFRILLHERSGTSAPF
EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEEECCCCCCCHH
RAAVAREIEHFISELAHYTEEKAKRSPELARAQAESMVTLVFNAGAAALDMKKSERKILA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHH
DQLVLQLRMVAKGAEFLQQKVDAK
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVRAQQKEKTRRALVDAAFNQLSAERSFSSLSLREVAREASIAPTSFYRHFKDMNELGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
TMVDEGGLALRQMMRKGRQRAEAGGSVIRISVDTFMEVLDSNPNVFRILLHERSGTSAPF
EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEEEECCCCCCCHH
RAAVAREIEHFISELAHYTEEKAKRSPELARAQAESMVTLVFNAGAAALDMKKSERKILA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHH
DQLVLQLRMVAKGAEFLQQKVDAK
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA