| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773301
Identifier: 119773301
GI number: 119773301
Start: 187894
End: 188409
Strand: Direct
Name: 119773301
Synonym: Sama_0159
Alternate gene names: NA
Gene position: 187894-188409 (Clockwise)
Preceding gene: 119773300
Following gene: 119773302
Centisome position: 4.36
GC content: 55.62
Gene sequence:
>516_bases ATGAAACAACCCATTCCGTTTGTGGCCGCCGACATCTCGGCATTGGCCAAGTCCCTTCGCAAGCAATTGATGGCCTGCGA GCAATTCCCGACCCATGTAGAAATGCTGAACCTGCTTGCCAAGGCCAGCGGGTATCAAAACTTTCAGCAGTTTAAGGCGC AGCAGGTGCCAGTGGGCGCGGATGCGTCAGGTGTTGACTCTTTGGCCGTGGATATTCCGGCCAAGCTGAAACCCTTTATG GACCAAGATTATGTGCTCAGGCAATGGCCCGGCCGTTTTGCGTTGCAGCAACAAAGTCTGTGGTTTTTCTGGTGCCGTTT CCGCTATGGGGTAGAGTACAGCGAGGCCGAGGTGAATGCCTTGCTCAAACCCTTTATCGGATTTGGGGATCATCCCCTTA TCCGGCGGGAACTGGTCAACAAGGCCCTGCTGGGACGCACCGACGATGGTGGTCGTTATTGGCGCCAAAGCGCCATTCCA CCTGCCGGATTTGAGCGCTTGGCCGAAGTCTGGTGA
Upstream 100 bases:
>100_bases CTGCCTTACACCTGAATCCGGTACCGTACATTCGCGTGCCCCGTTGGAAGTCGGCGATCACTGACACCCCAGGGCGGGCG CGCCTGTGTGAGGTACAGTC
Downstream 100 bases:
>100_bases GGTAAGTTAAGCCCCGAAGTGTGTTCGGGGCTTTTTTGTTGCTGCGCCAGCAAGTAGCATGATTTTACAATCAATGATGC CGTTTCGGTGAGACAGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MKQPIPFVAADISALAKSLRKQLMACEQFPTHVEMLNLLAKASGYQNFQQFKAQQVPVGADASGVDSLAVDIPAKLKPFM DQDYVLRQWPGRFALQQQSLWFFWCRFRYGVEYSEAEVNALLKPFIGFGDHPLIRRELVNKALLGRTDDGGRYWRQSAIP PAGFERLAEVW
Sequences:
>Translated_171_residues MKQPIPFVAADISALAKSLRKQLMACEQFPTHVEMLNLLAKASGYQNFQQFKAQQVPVGADASGVDSLAVDIPAKLKPFM DQDYVLRQWPGRFALQQQSLWFFWCRFRYGVEYSEAEVNALLKPFIGFGDHPLIRRELVNKALLGRTDDGGRYWRQSAIP PAGFERLAEVW >Mature_171_residues MKQPIPFVAADISALAKSLRKQLMACEQFPTHVEMLNLLAKASGYQNFQQFKAQQVPVGADASGVDSLAVDIPAKLKPFM DQDYVLRQWPGRFALQQQSLWFFWCRFRYGVEYSEAEVNALLKPFIGFGDHPLIRRELVNKALLGRTDDGGRYWRQSAIP PAGFERLAEVW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19479; Mature: 19479
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQPIPFVAADISALAKSLRKQLMACEQFPTHVEMLNLLAKASGYQNFQQFKAQQVPVGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC DASGVDSLAVDIPAKLKPFMDQDYVLRQWPGRFALQQQSLWFFWCRFRYGVEYSEAEVNA CCCCCCHHEECCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH LLKPFIGFGDHPLIRRELVNKALLGRTDDGGRYWRQSAIPPAGFERLAEVW HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHCC >Mature Secondary Structure MKQPIPFVAADISALAKSLRKQLMACEQFPTHVEMLNLLAKASGYQNFQQFKAQQVPVGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC DASGVDSLAVDIPAKLKPFMDQDYVLRQWPGRFALQQQSLWFFWCRFRYGVEYSEAEVNA CCCCCCHHEECCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH LLKPFIGFGDHPLIRRELVNKALLGRTDDGGRYWRQSAIPPAGFERLAEVW HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA