Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 119773300

GI number: 119773300

Start: 186759

End: 187667

Strand: Direct

Name: yafC [H]

Synonym: Sama_0158

Alternate gene names: 119773300

Gene position: 186759-187667 (Clockwise)

Preceding gene: 119773298

Following gene: 119773301

Centisome position: 4.34

GC content: 59.19

Gene sequence:

>909_bases
ATGAGACAGGGTCTGAACTGGGAAGACATTCGTTTGTTTGTGGCGGTTGCCGAGCTTGGCAGCTTCAGCGCTGCGGCGCG
GCAGTTGGGCTTGGGACAACCTACCCTGAGCAGGCGTATCGCAGAGCTTGAGGGGCAGTTGGGTGAGCCCTTGTTCATCC
GCCGATCCCAGGGCTGTGATTTGGCGCCGGCGGGACTGCGGCTGTTACCTGCCGCTGCTCAAATGGCCCAATGGGCCCAC
GATGCTGAGGTGAGCCTGGCCAGACCCGAGGAGCGTATTGCGGGTAAGGTGCGTATTACTGCGCCGCCGGGACTTGCGCT
GACTCTGCTGACTCAAGTTGCACAGGGGCTGAGGGCACGATTTCCGGCGTTGACCCTGGAAGCATTGTCGTCCACACATC
TGCTCGATTTGTCCAGGGGGGAAGCAGACATTGCCCTTCGCACCCAGGAGGTGGCTGAGCCTGGGCTCATAACGGTTGGC
AAGATACTGAGCAAACCCCAATTTTATGGCAGCCGGGAATATGCAGCGTCTCTGCCACCGGGGGCGACACTCTCGGATCT
TGCACTTATCTGTTGGAGCGAGGATCAGGGGCATTTCAGGGTAAACCGTGAATTGCATCGCCTGCTGCCGGGGTTTAAGC
CCGCCTTTGCCAGCGACGACTTCAATGTGCAGTTGGGTGCCTGTGTGCAGGGACTGGGCGCCATGGTGCTCTACGGTGCC
CTGATGTCCCACCCAATGCTCAGCTCTCTGGTGCGCTTGCCGGTGTCCTTTGACAGTGAGTATCGCGGCGAAATCTTTAT
TCAGGTGCACAAGCGACTGTACGGATTACCGAGGATCATGGCGGTACTGGATGAACTCGATAGCTTTGGACGTGGTATCG
CAGAGTATCAGGGGCCGGGCGAGGCGTGA

Upstream 100 bases:

>100_bases
TTTTGGCTACTTTTATCTTGTGGTCATGTTTTCATGGATGGACAGTCGTCTCAATTGGCGAATATCGTATGTAGGTATTC
GTTTTTGAATGGGTTTTGAA

Downstream 100 bases:

>100_bases
GTTTGTGCTCGCAGGCGAGAATTGGCTTGATTCGGACATCGACTTGCGCTTTTTGTACCTCTGGGTATGATGTCGTCTGG
GTCTGCAGTTCACCCAGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRQGLNWEDIRLFVAVAELGSFSAAARQLGLGQPTLSRRIAELEGQLGEPLFIRRSQGCDLAPAGLRLLPAAAQMAQWAH
DAEVSLARPEERIAGKVRITAPPGLALTLLTQVAQGLRARFPALTLEALSSTHLLDLSRGEADIALRTQEVAEPGLITVG
KILSKPQFYGSREYAASLPPGATLSDLALICWSEDQGHFRVNRELHRLLPGFKPAFASDDFNVQLGACVQGLGAMVLYGA
LMSHPMLSSLVRLPVSFDSEYRGEIFIQVHKRLYGLPRIMAVLDELDSFGRGIAEYQGPGEA

Sequences:

>Translated_302_residues
MRQGLNWEDIRLFVAVAELGSFSAAARQLGLGQPTLSRRIAELEGQLGEPLFIRRSQGCDLAPAGLRLLPAAAQMAQWAH
DAEVSLARPEERIAGKVRITAPPGLALTLLTQVAQGLRARFPALTLEALSSTHLLDLSRGEADIALRTQEVAEPGLITVG
KILSKPQFYGSREYAASLPPGATLSDLALICWSEDQGHFRVNRELHRLLPGFKPAFASDDFNVQLGACVQGLGAMVLYGA
LMSHPMLSSLVRLPVSFDSEYRGEIFIQVHKRLYGLPRIMAVLDELDSFGRGIAEYQGPGEA
>Mature_302_residues
MRQGLNWEDIRLFVAVAELGSFSAAARQLGLGQPTLSRRIAELEGQLGEPLFIRRSQGCDLAPAGLRLLPAAAQMAQWAH
DAEVSLARPEERIAGKVRITAPPGLALTLLTQVAQGLRARFPALTLEALSSTHLLDLSRGEADIALRTQEVAEPGLITVG
KILSKPQFYGSREYAASLPPGATLSDLALICWSEDQGHFRVNRELHRLLPGFKPAFASDDFNVQLGACVQGLGAMVLYGA
LMSHPMLSSLVRLPVSFDSEYRGEIFIQVHKRLYGLPRIMAVLDELDSFGRGIAEYQGPGEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=170, Percent_Identity=30.5882352941176, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI145693193, Length=148, Percent_Identity=32.4324324324324, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=123, Percent_Identity=30.8943089430894, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32777; Mature: 32777

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQGLNWEDIRLFVAVAELGSFSAAARQLGLGQPTLSRRIAELEGQLGEPLFIRRSQGCD
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
LAPAGLRLLPAAAQMAQWAHDAEVSLARPEERIAGKVRITAPPGLALTLLTQVAQGLRAR
CCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
FPALTLEALSSTHLLDLSRGEADIALRTQEVAEPGLITVGKILSKPQFYGSREYAASLPP
CCHHHHHHHCCCCEEECCCCCCCEEEEHHHHCCCCCEEHHHHHCCCCCCCCCCHHCCCCC
GATLSDLALICWSEDQGHFRVNRELHRLLPGFKPAFASDDFNVQLGACVQGLGAMVLYGA
CCCHHHEEEEEECCCCCCEEHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
LMSHPMLSSLVRLPVSFDSEYRGEIFIQVHKRLYGLPRIMAVLDELDSFGRGIAEYQGPG
HHHCHHHHHHHHCCCCCCCCCCCHHHEEEHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCC
EA
CC
>Mature Secondary Structure
MRQGLNWEDIRLFVAVAELGSFSAAARQLGLGQPTLSRRIAELEGQLGEPLFIRRSQGCD
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
LAPAGLRLLPAAAQMAQWAHDAEVSLARPEERIAGKVRITAPPGLALTLLTQVAQGLRAR
CCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
FPALTLEALSSTHLLDLSRGEADIALRTQEVAEPGLITVGKILSKPQFYGSREYAASLPP
CCHHHHHHHCCCCEEECCCCCCCEEEEHHHHCCCCCEEHHHHHCCCCCCCCCCHHCCCCC
GATLSDLALICWSEDQGHFRVNRELHRLLPGFKPAFASDDFNVQLGACVQGLGAMVLYGA
CCCHHHEEEEEECCCCCCEEHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
LMSHPMLSSLVRLPVSFDSEYRGEIFIQVHKRLYGLPRIMAVLDELDSFGRGIAEYQGPG
HHHCHHHHHHHHCCCCCCCCCCCHHHEEEHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCC
EA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]