| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773258
Identifier: 119773258
GI number: 119773258
Start: 130181
End: 131071
Strand: Reverse
Name: 119773258
Synonym: Sama_0116
Alternate gene names: NA
Gene position: 131071-130181 (Counterclockwise)
Preceding gene: 119773259
Following gene: 119773251
Centisome position: 3.04
GC content: 57.69
Gene sequence:
>891_bases TTGAGCTTTGAATACCTGGCGTTACTCGCCGCCGCCTGCTGGGCCGTTGGCAGCCTGATGTCGGCCACCGCCGCCACACA CCTTGGCGCCTTTGCCTTCACCCGCATCAGAATGCTCAGTGCCAGCGTTATGCTCTGGCTGCTGGCGCTGTTCGTTGGCA GCTGGCACAGCCTGACGTTGGACAGTCTTTATTTGTTGGCGCTCTCAGGGCTTATAGGGATTTTCATTGGCGATACGGCG CTGTTTGCTGCCATGAATCGCCTGGGGCCCAGAAGGGCCGGGGTACTCTTTGCCACCCACTCACTGTTTTCGGCTGTGCT GGCCTATCTGTTTCTCGGAGAAACCCTGTGGGGCTGGACCCTGTTTGGCAGTAGCCTGCTCATCAGCGGCGTGATGGTGG CCATCTTTTTCGGGAAGCGGAAAAACGAAGAACATGCCTGGGAAAACGGTAATCTGCAGGTCAAACGAGGCATGGCACTG GCACTCTTGTCAGCCCTGTGCCAAGCGGTATCCACCCTGATGCTCAAACCCCTGATGGAAACCGATATAGATGCAGTGGC GGCTTCGGCAGTGCGCATGAGCACAGCCTTTGTGCTGCATTTCGCGCTTTTGCTACTGGGCTTTTCCGTTGCTAAGGCCA AAACTCCCGCTACCCCCAAGGTGTTGGCACTCACCATTGGCAACGCTGCACTGTCAATGGTACTGGGCATGACACTGATA TTGCAGGCACTGAAACACGGCAATGCGGGCCTGGTGGCGATTTTGTCGTCGGTAAGCCCCATTCTGGTGTTACCGCTGCT ATGGCTGGTGTATCGCAAAAGCCCTGCGGCGGGCGCCTGGCTCGGCGCCATCATGACGGTGGCCGGCACTGTACTGATAC TGGCCCATTAG
Upstream 100 bases:
>100_bases AACTGTGTAGTGACAGAATGCCAGTTACCGAACGCTGGAGCATTAATAGCCAAGTCTCTATAATGGCGCCCCCGAATCCC ACTGACTCACAGGCGAATCC
Downstream 100 bases:
>100_bases GCTCTCCTTTACAGGACAGTAGCCACACCATCAAAGCCCCTGGTCGGGGCTTTTTCATTTGGTGTCTCAGTTGAACTCGA AGTTCACCTGTACCGGATAG
Product: hypothetical protein
Products: NA
Alternate protein names: Drug/Metabolite Exporter Family Protein; DMT Family Permease; Permease DMT Superfamily; Conserved Domain Protein; Transporter Drug/Metabolite Exporter Family; Integral Membrane Protein; Permeases Of Drug/Metabolite Transporter; Integral Membrane
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTLDSLYLLALSGLIGIFIGDTA LFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWTLFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMAL ALLSALCQAVSTLMLKPLMETDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH
Sequences:
>Translated_296_residues MSFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTLDSLYLLALSGLIGIFIGDTA LFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWTLFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMAL ALLSALCQAVSTLMLKPLMETDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH >Mature_295_residues SFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTLDSLYLLALSGLIGIFIGDTAL FAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWTLFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMALA LLSALCQAVSTLMLKPLMETDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLIL QALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31361; Mature: 31230
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: PS00257 BOMBESIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH DSLYLLALSGLIGIFIGDTALFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMALALLSALCQAVSTLMLKPLME HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH TDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHH LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECC >Mature Secondary Structure SFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH DSLYLLALSGLIGIFIGDTALFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMALALLSALCQAVSTLMLKPLME HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH TDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHH LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA