| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773251
Identifier: 119773251
GI number: 119773251
Start: 122136
End: 123344
Strand: Reverse
Name: 119773251
Synonym: Sama_0109
Alternate gene names: NA
Gene position: 123344-122136 (Counterclockwise)
Preceding gene: 119773258
Following gene: 119773250
Centisome position: 2.86
GC content: 50.87
Gene sequence:
>1209_bases ATGAGTAAAATTAAGGTAGCACTGCTGGTCGATGAATATTTTGGCGGCGCCAAAACCAAATATGGCGGATATGGCTTTTT GGCCAGACATCTGGTGGCCAAACACCTGCCTGACGATCAGGTCGACGTGGACGTTTTGCTGAAAAAAGACTGCGGCAAAG TGCGTCTTTGGCCCAAGTGTTTTATGGTCGATGGCATCAGGGTATACAAGCTGGCAGCACGGGCCTTTGATTGGGTAAAC AACCTGTTTCTGCGGCAGAAAAACTATGATGTTTTTCTTTCCATCGAAATGACCACCCACTCCTACCGCATCTTCAGCAA GGCCCCGGGGAAAAATAAAAAACTGCTGTTTTGGATCCAGGACCCGAGACCCACCTACGAGTGGGATGAAATCCAGACCG TGAAGCTCTTTCCCGAGCCCAGTTACTGGGATGCAGAGATCTACGATTTTGTGAATCAATACGCCCGGAGTGGCAACGTA CGCTTTATCAGTCAGGCAAAGTGTCTCGATCAAAAGGCCAGGGACTTGTATCGATTACCTGCCAATACGTCCATCAACTA CCTGCCGAACCCAATCGAAATTGATGAGACGTTTGACCTGGACAGCTTCCCGAAGCAAAACAGCATAATATTCCTTGGCC GTATCGAGTCCGTAAAGCGGGGTTGGCTGTTCGCCGAAATCGCCAAGGCCATGCCGCAGTGCCAGTTTTATATGTTGGGT CAGGCACACAGACAGGCGGATGAAAACAATGCCGTGATGTCAGGCTACCAGGCCATTCCCAACCTGCATTTCGTCGGTCA TGTGGAAGGCGAGCAGAAGAATCGTTTCCTGAAAGAGGCCAAGGTGTTGGTTAATACCTCTATTCATGAAGCCCTGCCGA TTTCCTTCCTCGAGGCCCTGTCCTACGGCACCCTGCTGGTGAGTTGCCAGAATCCCGATGAACTGGCGAGCAAGTTTGGC GTGTATACCGGCAAGGTGTTGGGTGATGGCTTCGACAAGGTGGAACTCTTTGTCGCCGGAATCAACCAGCTGCTGACAAA TGATGACCACAGACACCAACTCGCAAAAGACGCCATTGCCTATATTAAAGAAGTGCATTCACTGTCCCGCTTCACAGGGG ACATCAAGCATGAACTGTTGACCCTGTGCGCAAGCCGCAATGAGCCAGTGAAAGCAACTGGCCGCACCACCACCAGCACA GTACAATAG
Upstream 100 bases:
>100_bases TTCAATAAATACACATTTAAGATAATGATTTTATTAATTATTTTGCTATTGGCGGATGAGTTAATACAATGCCCGCAAAC GGGCAATCCAGAAAGCATTC
Downstream 100 bases:
>100_bases CCTTTTATCTGTGTGGAACAGAGATGAAACGACTCATAGTAGATTTGGATGGCACCCTCACCAAGGCCGACAACACAGAT TACAGTGCCGTGTCGCCCCG
Product: glycosyl transferase, group 1 family protein
Products: NA
Alternate protein names: Glycosyl Transferase Group 1 Protein; Glycosyltransferase
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSKIKVALLVDEYFGGAKTKYGGYGFLARHLVAKHLPDDQVDVDVLLKKDCGKVRLWPKCFMVDGIRVYKLAARAFDWVN NLFLRQKNYDVFLSIEMTTHSYRIFSKAPGKNKKLLFWIQDPRPTYEWDEIQTVKLFPEPSYWDAEIYDFVNQYARSGNV RFISQAKCLDQKARDLYRLPANTSINYLPNPIEIDETFDLDSFPKQNSIIFLGRIESVKRGWLFAEIAKAMPQCQFYMLG QAHRQADENNAVMSGYQAIPNLHFVGHVEGEQKNRFLKEAKVLVNTSIHEALPISFLEALSYGTLLVSCQNPDELASKFG VYTGKVLGDGFDKVELFVAGINQLLTNDDHRHQLAKDAIAYIKEVHSLSRFTGDIKHELLTLCASRNEPVKATGRTTTST VQ
Sequences:
>Translated_402_residues MSKIKVALLVDEYFGGAKTKYGGYGFLARHLVAKHLPDDQVDVDVLLKKDCGKVRLWPKCFMVDGIRVYKLAARAFDWVN NLFLRQKNYDVFLSIEMTTHSYRIFSKAPGKNKKLLFWIQDPRPTYEWDEIQTVKLFPEPSYWDAEIYDFVNQYARSGNV RFISQAKCLDQKARDLYRLPANTSINYLPNPIEIDETFDLDSFPKQNSIIFLGRIESVKRGWLFAEIAKAMPQCQFYMLG QAHRQADENNAVMSGYQAIPNLHFVGHVEGEQKNRFLKEAKVLVNTSIHEALPISFLEALSYGTLLVSCQNPDELASKFG VYTGKVLGDGFDKVELFVAGINQLLTNDDHRHQLAKDAIAYIKEVHSLSRFTGDIKHELLTLCASRNEPVKATGRTTTST VQ >Mature_401_residues SKIKVALLVDEYFGGAKTKYGGYGFLARHLVAKHLPDDQVDVDVLLKKDCGKVRLWPKCFMVDGIRVYKLAARAFDWVNN LFLRQKNYDVFLSIEMTTHSYRIFSKAPGKNKKLLFWIQDPRPTYEWDEIQTVKLFPEPSYWDAEIYDFVNQYARSGNVR FISQAKCLDQKARDLYRLPANTSINYLPNPIEIDETFDLDSFPKQNSIIFLGRIESVKRGWLFAEIAKAMPQCQFYMLGQ AHRQADENNAVMSGYQAIPNLHFVGHVEGEQKNRFLKEAKVLVNTSIHEALPISFLEALSYGTLLVSCQNPDELASKFGV YTGKVLGDGFDKVELFVAGINQLLTNDDHRHQLAKDAIAYIKEVHSLSRFTGDIKHELLTLCASRNEPVKATGRTTTSTV Q
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45880; Mature: 45749
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIKVALLVDEYFGGAKTKYGGYGFLARHLVAKHLPDDQVDVDVLLKKDCGKVRLWPKC CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECCEE FMVDGIRVYKLAARAFDWVNNLFLRQKNYDVFLSIEMTTHSYRIFSKAPGKNKKLLFWIQ EEECCHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCEEEEEECCCCCCCEEEEEEC DPRPTYEWDEIQTVKLFPEPSYWDAEIYDFVNQYARSGNVRFISQAKCLDQKARDLYRLP CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEECC ANTSINYLPNPIEIDETFDLDSFPKQNSIIFLGRIESVKRGWLFAEIAKAMPQCQFYMLG CCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEHHHHHHCHHHHHHHHHCCCCEEEECC QAHRQADENNAVMSGYQAIPNLHFVGHVEGEQKNRFLKEAKVLVNTSIHEALPISFLEAL HHHHCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SYGTLLVSCQNPDELASKFGVYTGKVLGDGFDKVELFVAGINQLLTNDDHRHQLAKDAIA CCCEEEEEECCHHHHHHHHCCEECHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH YIKEVHSLSRFTGDIKHELLTLCASRNEPVKATGRTTTSTVQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC >Mature Secondary Structure SKIKVALLVDEYFGGAKTKYGGYGFLARHLVAKHLPDDQVDVDVLLKKDCGKVRLWPKC CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECCEE FMVDGIRVYKLAARAFDWVNNLFLRQKNYDVFLSIEMTTHSYRIFSKAPGKNKKLLFWIQ EEECCHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCEEEEEECCCCCCCEEEEEEC DPRPTYEWDEIQTVKLFPEPSYWDAEIYDFVNQYARSGNVRFISQAKCLDQKARDLYRLP CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEECC ANTSINYLPNPIEIDETFDLDSFPKQNSIIFLGRIESVKRGWLFAEIAKAMPQCQFYMLG CCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEHHHHHHCHHHHHHHHHCCCCEEEECC QAHRQADENNAVMSGYQAIPNLHFVGHVEGEQKNRFLKEAKVLVNTSIHEALPISFLEAL HHHHCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH SYGTLLVSCQNPDELASKFGVYTGKVLGDGFDKVELFVAGINQLLTNDDHRHQLAKDAIA CCCEEEEEECCHHHHHHHHCCEECHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH YIKEVHSLSRFTGDIKHELLTLCASRNEPVKATGRTTTSTVQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA