| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is arnT2 [H]
Identifier: 119773256
GI number: 119773256
Start: 127172
End: 128935
Strand: Direct
Name: arnT2 [H]
Synonym: Sama_0114
Alternate gene names: 119773256
Gene position: 127172-128935 (Clockwise)
Preceding gene: 119773255
Following gene: 119773257
Centisome position: 2.95
GC content: 54.02
Gene sequence:
>1764_bases ATGACAGCATTGTTCAGACTCTTTGCCGATGACGATAAGAAACGGGTGTTTTGGGCCCTCTTCAGTCTTACGCTGCTGGT GATGTTGATTGGCATTGGCATGCGATCTCCCTGGCCTGCCGATGAGCCACGTTTTGTGGAAGTAGCCCGGGAAATGGTGA TGGGCGGTGAATGGTTGTTCCCCACCCGCGGTGGAGAATTCTATCCCGATAAACCCCCGGTATTTATGTGGGCCATCGCC GCTGTTTATTGGTTGATTGGCGACCTCAAACTGGCCTTTCTTATTCCCAACGCCCTCTGCGGATTGTTGACCGTCATGCT GGTTTACGACTTGGGTTGCCGTTTGTGGAGCGTCAGGGTCGGCCGTAATGCAGCCTTGTTGCTTTTGTTGGTGCCGCAAT TTTTGATGCAGGCAAAGAATGCCCAGATAGATGCCATGGTAGCCTGTTGGATTACCTTGGGATGCTATGGTCTGGTGAGG CACTTTGTGCTCGGACCCCATTGGCGTTGGTTTTTTGCTTCCTGGGCCTTTATGGGGCTTGGGGTAATCACCAAGGGGGT GGGTTTTTTACCGCTGCTGATGTTATTGCCGCTGGCTTGGTATCGCTGGCAAATGGTCACCGGCAGGGCACTTTTGCCCA ACCAGGCCTGGTCCTGGAAGGTAGCCCTTGGGCCACTGGCTATGTTGGGCGTTATTGCCCTGTGGCTGGTACCCATGTTG CTGGCAGTTTGGCTGGATGCCACCCCAGAGCACCAGGCCTATATGAACAACATCTTATTCAAGCAAACCGGTGAGCGTTA CGTTAACGCCTGGCATCATATCAAACCCTGGTATTTCTTTATTTTCAGCGTCATTCCCTGGCTCTGGTTCCCGTTGCCCT TGTTGGCCATTGCCCACGGTAAACGTTTTGTAGCGCGCATCAAGCAAGATCCCGTGATTGCCATTTTGCTGCTTTGGGTT TTACTGGTGGTGGTGTTCTTCAGCCTGAGCCCGGGCAAGCGCAACGTATATATTTTGCCTGCTCTCCCTATGGCCAGCTT GGCGATGGCGGCGATTCTTGACGGTGAGCAGCCCAAACGCTGGTTTGAGCTGCTGGTGAAGGGGGGCTTGTGGGTCTTGG GCACACTATTGCTGCTTGTGGGGGTGCTGGCGCTTTTGCACCATCCCAAGCTTGCTGCCCGGCTTGCCGATTACACCGAC GACTTAACGGGCATAGGCCTGATGCTGCTGGTGCTTGGCGGTTTGTGGCTTACCTGCTTGTGGTGGCTCAGAAAGCAAAT CTCGCTGCTCAATGCCGGTGCCGTGACATTACTTGGCTGGCTAGTGGTTGGCACCTGGGGCTATATGCTGCTCGATAGCA TGCGTACACCGCAGCAACTCATGCAGCATACGGCGCAAACCATAGGTGAAGATGCCGAGCTTGGGCTGATTAAGTTCAAG GAACAATTCATCCTGTTTTCACCTGTGTCTGTGACGCACTTCAGCTACCTGGCGAGTGTCGAGGAACAAGAGCGCAATGC CTGGGCCTGGATGAAAGAAGCAGGGATGATGAAAGGCAATGCCTCTGAACAGCAACGTTTCTTGCTGGTTCCCGAAGGCA CAACACTGAACTGTTTTGAACTGTCCAGGGGCCGTAGCATGGGCATTGCCCACAGGGACAACTGGCTTTTGCTGGATGCA GACGCCATGTCAGTAAGCTGTGATGCACCCAAACGGGTCTACCGTTACCACACTGACCATCCGGGCCATTGGCTTACGGA CTAG
Upstream 100 bases:
>100_bases TGGTGCTCTTTATTCTCTCCAGCGCCATAGGGGCGTACCTGTACCGCAGTCATCTTAAGCGGCAGGTAGATGAAATTGCC GAAGAATCGTAAGGATACCC
Downstream 100 bases:
>100_bases TTACCAAAGCCCCGCATGCGGGGCTTTTTTGTTCCTGTGTCAGTCATAAAACCTTTATCTCAATGACATCTCCCTGACGT CTTAATGACATTCAGCTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase 2; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase 2 [H]
Number of amino acids: Translated: 587; Mature: 586
Protein sequence:
>587_residues MTALFRLFADDDKKRVFWALFSLTLLVMLIGIGMRSPWPADEPRFVEVAREMVMGGEWLFPTRGGEFYPDKPPVFMWAIA AVYWLIGDLKLAFLIPNALCGLLTVMLVYDLGCRLWSVRVGRNAALLLLLVPQFLMQAKNAQIDAMVACWITLGCYGLVR HFVLGPHWRWFFASWAFMGLGVITKGVGFLPLLMLLPLAWYRWQMVTGRALLPNQAWSWKVALGPLAMLGVIALWLVPML LAVWLDATPEHQAYMNNILFKQTGERYVNAWHHIKPWYFFIFSVIPWLWFPLPLLAIAHGKRFVARIKQDPVIAILLLWV LLVVVFFSLSPGKRNVYILPALPMASLAMAAILDGEQPKRWFELLVKGGLWVLGTLLLLVGVLALLHHPKLAARLADYTD DLTGIGLMLLVLGGLWLTCLWWLRKQISLLNAGAVTLLGWLVVGTWGYMLLDSMRTPQQLMQHTAQTIGEDAELGLIKFK EQFILFSPVSVTHFSYLASVEEQERNAWAWMKEAGMMKGNASEQQRFLLVPEGTTLNCFELSRGRSMGIAHRDNWLLLDA DAMSVSCDAPKRVYRYHTDHPGHWLTD
Sequences:
>Translated_587_residues MTALFRLFADDDKKRVFWALFSLTLLVMLIGIGMRSPWPADEPRFVEVAREMVMGGEWLFPTRGGEFYPDKPPVFMWAIA AVYWLIGDLKLAFLIPNALCGLLTVMLVYDLGCRLWSVRVGRNAALLLLLVPQFLMQAKNAQIDAMVACWITLGCYGLVR HFVLGPHWRWFFASWAFMGLGVITKGVGFLPLLMLLPLAWYRWQMVTGRALLPNQAWSWKVALGPLAMLGVIALWLVPML LAVWLDATPEHQAYMNNILFKQTGERYVNAWHHIKPWYFFIFSVIPWLWFPLPLLAIAHGKRFVARIKQDPVIAILLLWV LLVVVFFSLSPGKRNVYILPALPMASLAMAAILDGEQPKRWFELLVKGGLWVLGTLLLLVGVLALLHHPKLAARLADYTD DLTGIGLMLLVLGGLWLTCLWWLRKQISLLNAGAVTLLGWLVVGTWGYMLLDSMRTPQQLMQHTAQTIGEDAELGLIKFK EQFILFSPVSVTHFSYLASVEEQERNAWAWMKEAGMMKGNASEQQRFLLVPEGTTLNCFELSRGRSMGIAHRDNWLLLDA DAMSVSCDAPKRVYRYHTDHPGHWLTD >Mature_586_residues TALFRLFADDDKKRVFWALFSLTLLVMLIGIGMRSPWPADEPRFVEVAREMVMGGEWLFPTRGGEFYPDKPPVFMWAIAA VYWLIGDLKLAFLIPNALCGLLTVMLVYDLGCRLWSVRVGRNAALLLLLVPQFLMQAKNAQIDAMVACWITLGCYGLVRH FVLGPHWRWFFASWAFMGLGVITKGVGFLPLLMLLPLAWYRWQMVTGRALLPNQAWSWKVALGPLAMLGVIALWLVPMLL AVWLDATPEHQAYMNNILFKQTGERYVNAWHHIKPWYFFIFSVIPWLWFPLPLLAIAHGKRFVARIKQDPVIAILLLWVL LVVVFFSLSPGKRNVYILPALPMASLAMAAILDGEQPKRWFELLVKGGLWVLGTLLLLVGVLALLHHPKLAARLADYTDD LTGIGLMLLVLGGLWLTCLWWLRKQISLLNAGAVTLLGWLVVGTWGYMLLDSMRTPQQLMQHTAQTIGEDAELGLIKFKE QFILFSPVSVTHFSYLASVEEQERNAWAWMKEAGMMKGNASEQQRFLLVPEGTTLNCFELSRGRSMGIAHRDNWLLLDAD AMSVSCDAPKRVYRYHTDHPGHWLTD
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=343, Percent_Identity=25.6559766763848, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 66715; Mature: 66584
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALFRLFADDDKKRVFWALFSLTLLVMLIGIGMRSPWPADEPRFVEVAREMVMGGEWLF CCHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEE PTRGGEFYPDKPPVFMWAIAAVYWLIGDLKLAFLIPNALCGLLTVMLVYDLGCRLWSVRV ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE GRNAALLLLLVPQFLMQAKNAQIDAMVACWITLGCYGLVRHFVLGPHWRWFFASWAFMGL CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH GVITKGVGFLPLLMLLPLAWYRWQMVTGRALLPNQAWSWKVALGPLAMLGVIALWLVPML HHHHHCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHHHHHHHHHHHHHHHH LAVWLDATPEHQAYMNNILFKQTGERYVNAWHHIKPWYFFIFSVIPWLWFPLPLLAIAHG HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC KRFVARIKQDPVIAILLLWVLLVVVFFSLSPGKRNVYILPALPMASLAMAAILDGEQPKR HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHH WFELLVKGGLWVLGTLLLLVGVLALLHHPKLAARLADYTDDLTGIGLMLLVLGGLWLTCL HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH WWLRKQISLLNAGAVTLLGWLVVGTWGYMLLDSMRTPQQLMQHTAQTIGEDAELGLIKFK HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHEEC EQFILFSPVSVTHFSYLASVEEQERNAWAWMKEAGMMKGNASEQQRFLLVPEGTTLNCFE CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEE LSRGRSMGIAHRDNWLLLDADAMSVSCDAPKRVYRYHTDHPGHWLTD CCCCCCCCCEECCCEEEEECCCCEECCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure TALFRLFADDDKKRVFWALFSLTLLVMLIGIGMRSPWPADEPRFVEVAREMVMGGEWLF CHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEE PTRGGEFYPDKPPVFMWAIAAVYWLIGDLKLAFLIPNALCGLLTVMLVYDLGCRLWSVRV ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE GRNAALLLLLVPQFLMQAKNAQIDAMVACWITLGCYGLVRHFVLGPHWRWFFASWAFMGL CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH GVITKGVGFLPLLMLLPLAWYRWQMVTGRALLPNQAWSWKVALGPLAMLGVIALWLVPML HHHHHCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHHHHHHHHHHHHHHHH LAVWLDATPEHQAYMNNILFKQTGERYVNAWHHIKPWYFFIFSVIPWLWFPLPLLAIAHG HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC KRFVARIKQDPVIAILLLWVLLVVVFFSLSPGKRNVYILPALPMASLAMAAILDGEQPKR HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHHH WFELLVKGGLWVLGTLLLLVGVLALLHHPKLAARLADYTDDLTGIGLMLLVLGGLWLTCL HHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH WWLRKQISLLNAGAVTLLGWLVVGTWGYMLLDSMRTPQQLMQHTAQTIGEDAELGLIKFK HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHEEC EQFILFSPVSVTHFSYLASVEEQERNAWAWMKEAGMMKGNASEQQRFLLVPEGTTLNCFE CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEE LSRGRSMGIAHRDNWLLLDADAMSVSCDAPKRVYRYHTDHPGHWLTD CCCCCCCCCEECCCEEEEECCCCEECCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA