| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is coaD [H]
Identifier: 119773252
GI number: 119773252
Start: 123549
End: 124118
Strand: Direct
Name: coaD [H]
Synonym: Sama_0110
Alternate gene names: 119773252
Gene position: 123549-124118 (Clockwise)
Preceding gene: 119773246
Following gene: 119773253
Centisome position: 2.87
GC content: 51.93
Gene sequence:
>570_bases ATGCACCTGAGGCGTACTTGTGGCAGAATGGGCAAACTTTCTTTGGGCTATCAACCCTTAACTCGATACGACACAGGTCT GTATATGCATACAAGAGCCATCTATCCCGGTACTTTCGATCCTGTCACCAATGGGCATGCGGATCTGATAGAGCGGGCCG CCAACCTGTTTAAGCATGTGGTAATAGGCGTGGCAGCCAGCCCGTCAAAACAGCCGAAGTTTTCATTGGAAAAACGGGTA GAGCTGCTGAAAAAGGTCACAGCTCATCTGGATAACGTGGAAGTGGTCGGATTTACCGGCTTGCTGGTGGACTTTGCCAA AGACCAGCAGGCCAGTGTACTGGTGCGGGGCCTGCGAGCCGTGTCGGACTTTGAGTATGAATTCCAACTGGCCAACATGA ACCGTCGCTTAAGCCCGGATCTGGAAAGCGTGTTCCTGACGCCCGCAGAAGAAAACTCCTTTATCTCATCAACTCTGGTG AAAGAGGTGGCGCTTCATGGGGGCGATGTGAGCCAATTTGTACATCCTGACGTTGCCGCAGAATTATTGGCACTGCCGCG TAAGAAGTGA
Upstream 100 bases:
>100_bases TGGTTTTGTTTTTGTGTGACTGGTGAATGGTGTGTTACGTATTTGGTCCGGAGTTTTGAGGTTACCGGATGCAGGCTTGT AATTTGCCTGTTGTGAGGCC
Downstream 100 bases:
>100_bases ATGATTAAAAGGGATTTTATGAAGTACATGTCGTTATCTGCGCTGAGCTTGGCGCTGCTGTCTGCGTCAACTCTGGCGGC ACCTTGGGTCGATGCATCCG
Product: pantetheine-phosphate adenylyltransferase
Products: NA
Alternate protein names: Dephospho-CoA pyrophosphorylase; Pantetheine-phosphate adenylyltransferase; PPAT [H]
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MHLRRTCGRMGKLSLGYQPLTRYDTGLYMHTRAIYPGTFDPVTNGHADLIERAANLFKHVVIGVAASPSKQPKFSLEKRV ELLKKVTAHLDNVEVVGFTGLLVDFAKDQQASVLVRGLRAVSDFEYEFQLANMNRRLSPDLESVFLTPAEENSFISSTLV KEVALHGGDVSQFVHPDVAAELLALPRKK
Sequences:
>Translated_189_residues MHLRRTCGRMGKLSLGYQPLTRYDTGLYMHTRAIYPGTFDPVTNGHADLIERAANLFKHVVIGVAASPSKQPKFSLEKRV ELLKKVTAHLDNVEVVGFTGLLVDFAKDQQASVLVRGLRAVSDFEYEFQLANMNRRLSPDLESVFLTPAEENSFISSTLV KEVALHGGDVSQFVHPDVAAELLALPRKK >Mature_189_residues MHLRRTCGRMGKLSLGYQPLTRYDTGLYMHTRAIYPGTFDPVTNGHADLIERAANLFKHVVIGVAASPSKQPKFSLEKRV ELLKKVTAHLDNVEVVGFTGLLVDFAKDQQASVLVRGLRAVSDFEYEFQLANMNRRLSPDLESVFLTPAEENSFISSTLV KEVALHGGDVSQFVHPDVAAELLALPRKK
Specific function: Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate [H]
COG id: COG0669
COG function: function code H; Phosphopantetheine adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial CoaD family [H]
Homologues:
Organism=Escherichia coli, GI1790065, Length=156, Percent_Identity=62.8205128205128, Blast_Score=214, Evalue=4e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR001980 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2 [H]
EC number: =2.7.7.3 [H]
Molecular weight: Translated: 21006; Mature: 21006
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLRRTCGRMGKLSLGYQPLTRYDTGLYMHTRAIYPGTFDPVTNGHADLIERAANLFKHV CCCHHHHCCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH VIGVAASPSKQPKFSLEKRVELLKKVTAHLDNVEVVGFTGLLVDFAKDQQASVLVRGLRA HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHH VSDFEYEFQLANMNRRLSPDLESVFLTPAEENSFISSTLVKEVALHGGDVSQFVHPDVAA HHCCCEEEEEECCCCCCCCCCHHEEECCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHHH ELLALPRKK HHHHCCCCC >Mature Secondary Structure MHLRRTCGRMGKLSLGYQPLTRYDTGLYMHTRAIYPGTFDPVTNGHADLIERAANLFKHV CCCHHHHCCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH VIGVAASPSKQPKFSLEKRVELLKKVTAHLDNVEVVGFTGLLVDFAKDQQASVLVRGLRA HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCHHHHHHHHHHHH VSDFEYEFQLANMNRRLSPDLESVFLTPAEENSFISSTLVKEVALHGGDVSQFVHPDVAA HHCCCEEEEEECCCCCCCCCCHHEEECCCCCCHHHHHHHHHHHHHCCCCHHHHCCHHHHH ELLALPRKK HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA