Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773245

Identifier: 119773245

GI number: 119773245

Start: 116150

End: 117250

Strand: Direct

Name: 119773245

Synonym: Sama_0103

Alternate gene names: NA

Gene position: 116150-117250 (Clockwise)

Preceding gene: 119773244

Following gene: 119773246

Centisome position: 2.7

GC content: 55.68

Gene sequence:

>1101_bases
ATGACTCAATCAATGGCCCCAAACTCCGTGGTCACGCAATCTATGGCTCCAAAATTTTTGTTTATCCCCGTCTCTTCTGC
TGAAGGCATGGGGGAGTACATGCGCTCGCTGATAGTGGCAGATGAAGTGAAGCGCTGCTGGCCAGCTGCCGAGGTGTGTT
TCATTCTCAGCAAGGAAGCACCTTACGCAGCCAGCTGCCCATATCCAGCCAAACTGCTGGACCGCACACCCACCAAAGAA
GTGAAGGCCGTGAATGACATCATGGAGACATTTCGCCCCGATGTGGTGCTCTTTGATGCGTCCGGCCGCAAGTCTCAGCT
GGCACGGGCCCATGCCCTGGGCGCCAAAGTTGTGTTTTTCAGCCAGCACAGGCGCAAGCGCAGCCGTGGTATGAAAATAG
GCCGTGCCCGGGTGACGGATGCCCATCTGGTCGTACAGCCGGAATTTGTGATTGGTCCCGTTTCCGCTTTCGATGCTTTT
AAGTTGAAATTGATTGGTAAGCCGCTGCCTGAGTGTATTGGGCCTGTGTTCAGCGCGCCGGATAAGGCAAGACAGCAGCA
ACTGCTCGCCCAATATGGTCTGGTCGACGGGGAGTTTGTGCTCTTTAACGCCGGCTCAGGTGGGCATAAGTTGGCCGGAG
GCCTCGCAGCAGACCGTTTTTTTGAGGCAGCACAAGCCAGCTATGTCGCCAGTGGGCTCAAATCCGTCATGGTGTTTGGT
CCCAATTATCCCAAGGCATTACCCGAGGCATCGGGAGTGATTTGTCTGAGCGCCCTGGCCAATAGTGACTTTATTAACTT
GCTGGTGGCTGCCAAAGCGGCGGTGCTGAGCGGTGGTGATACCTTGCTGCAGGCTATCGCCTTGAAAAAGCTGGTACTGA
CGGCTCCGGTTTCCAAAGACCAGCCGCCGCGTATCGCTGTTTGTGCCGACAGAGGGCTGGTGCTGGCCTGTGAGCCAGAG
CAGCTTGCCGCCAACATTCCTGCTCTGTTTTCCGATGAAACCACAGGGCCACTGCAGCAGGCACTGGCAGCCGAAGCCGA
TATGGACGGCCTGCAACTGACCATGAATAAAATTAAGCATTTGCTGGAGGTTCAGCCATGA

Upstream 100 bases:

>100_bases
CGGGCCAAGGGCGACACTCTGATGGAAAAAATTGAAGTTGCTGACGTTTGTCGCATGTTCGACAGGGCCACGGACGTCGC
CACCCAGGAGGTGTAAGGTT

Downstream 100 bases:

>100_bases
CAGGACGCAGAATTGCCATTGCCATCGACAGTTTGGCCGGTGGCGGCGCAGAAAAGGTGATGTTGACCCTGGCGTCCACC
CTGGTGGAGCTGGGCCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MTQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEAPYAASCPYPAKLLDRTPTKE
VKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFFSQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAF
KLKLIGKPLPECIGPVFSAPDKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG
PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKDQPPRIAVCADRGLVLACEPE
QLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKHLLEVQP

Sequences:

>Translated_366_residues
MTQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEAPYAASCPYPAKLLDRTPTKE
VKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFFSQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAF
KLKLIGKPLPECIGPVFSAPDKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG
PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKDQPPRIAVCADRGLVLACEPE
QLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKHLLEVQP
>Mature_365_residues
TQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEAPYAASCPYPAKLLDRTPTKEV
KAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFFSQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAFK
LKLIGKPLPECIGPVFSAPDKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFGP
NYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKDQPPRIAVCADRGLVLACEPEQ
LAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKHLLEVQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39121; Mature: 38990

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEA
CCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCC
PYAASCPYPAKLLDRTPTKEVKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFF
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEH
SQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAFKLKLIGKPLPECIGPVFSAP
HHHHHHHHCCCEECCEEECCCEEEEECCCEEECCHHHHHHEEEECCCCCHHHHHHHHCCC
DKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG
HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEC
PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKD
CCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
QPPRIAVCADRGLVLACEPEQLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKH
CCCEEEEEECCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LLEVQP
HHCCCC
>Mature Secondary Structure 
TQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEA
CCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCC
PYAASCPYPAKLLDRTPTKEVKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFF
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEH
SQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAFKLKLIGKPLPECIGPVFSAP
HHHHHHHHCCCEECCEEECCCEEEEECCCEEECCHHHHHHEEEECCCCCHHHHHHHHCCC
DKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG
HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEC
PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKD
CCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
QPPRIAVCADRGLVLACEPEQLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKH
CCCEEEEEECCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LLEVQP
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA