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The map label for this gene is yafD [C]

Identifier: 119773144

GI number: 119773144

Start: 657

End: 1571

Strand: Direct

Name: yafD [C]

Synonym: Sama_0002

Alternate gene names: 119773144

Gene position: 657-1571 (Clockwise)

Preceding gene: NA

Following gene: 119773147

Centisome position: 0.02

GC content: 50.6

Gene sequence:

>915_bases
ATGACCAACAAGCAGAAAATAGTCGTCTGGTTGAGTGCCGCCCTCATTGCCCTGTTAATTGGTTTGCTGATGACAGTGCT
GGTGAAGATCCCGGATGTACCCCGGGTGGTTTTGGGCGAAAGCGCTATGGTGTTAACCCATCAGGGGCGCTGTTTTTACC
GCGAGGATTCTGGTACTGCACTGGATGACAGCCCTATTGATGAGCGTGGCGTAATTGCCCTGCTGGTTTGGAATATCCAC
AAGCAAAGTGATGGTGAGTGGCCTAAAGCGCTGTGGACACAGGGGCTTCACTGGCAGTTACTGTTACTCCAGGAGGTTGA
ACTCAATACGGATTTCACAGCAGCGCTTGATAATCATCAGGTTAGCTGGAGTATGATGCCCGCCTTTCGCTTTCAGGGTT
TGGATTATGGTGTGATGTTGGCCTCGCGCCGACCACCGCTTGAGGGTTGCGGCCTGTTAAAGGTAGAGCCCTGGATCCGA
CTTCCCAAAGCGGCGCTTTATGGCCTTTATGCCCTGAGCAACGGTGAAATATTGCTGGTGGTTAATCTCCACGGGATCAA
TTTTGATCCCAATTTGCAGGAGTGGGAAGATCAATTGGCGCCGCTTTTGGGCCTGGTAATGCAACATCGTGGACCTGTGA
TCCTGGCGGGGGATTTTAACAGCTGGGGAGAGCGCAGAAGTCAAAAACTTGAAAAACTCATCGAGCCACTCGGGCTTAAG
GCCGCAATATTTGAGCCTGATGAGCGTATCAGGGTCTTTGGTACTCCACTTGATTGGGTATTTTACCGAGGTTTACATCT
GAAAAAGGCGCAATCACCCACAACAAATGTGTCGGATCATGCGCCCCTTATGGTGCAGTTTGAACTTATCTCCGGGTCAA
CCAGTGATGATGAAACTCCAGGTGTTCATCGATAA

Upstream 100 bases:

>100_bases
TAGCCCAAAGCCAGGGGCGGTGGAACGGATCTCAAGTCTCTAGGTACTGTGCTAGCATGGAGCCGTCACCGGATTACCGC
CAAGGGGCAAACACATCGCT

Downstream 100 bases:

>100_bases
AGCTCGCGATAAAGTAGTAGCTGTGATCGTAGCCAGGCTGCATTCGCAGATTCAGCGGAAAGTCGGCATTGTCTGCGGCA
TGTTGCAGACGCTGCGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTNKQKIVVWLSAALIALLIGLLMTVLVKIPDVPRVVLGESAMVLTHQGRCFYREDSGTALDDSPIDERGVIALLVWNIH
KQSDGEWPKALWTQGLHWQLLLLQEVELNTDFTAALDNHQVSWSMMPAFRFQGLDYGVMLASRRPPLEGCGLLKVEPWIR
LPKAALYGLYALSNGEILLVVNLHGINFDPNLQEWEDQLAPLLGLVMQHRGPVILAGDFNSWGERRSQKLEKLIEPLGLK
AAIFEPDERIRVFGTPLDWVFYRGLHLKKAQSPTTNVSDHAPLMVQFELISGSTSDDETPGVHR

Sequences:

>Translated_304_residues
MTNKQKIVVWLSAALIALLIGLLMTVLVKIPDVPRVVLGESAMVLTHQGRCFYREDSGTALDDSPIDERGVIALLVWNIH
KQSDGEWPKALWTQGLHWQLLLLQEVELNTDFTAALDNHQVSWSMMPAFRFQGLDYGVMLASRRPPLEGCGLLKVEPWIR
LPKAALYGLYALSNGEILLVVNLHGINFDPNLQEWEDQLAPLLGLVMQHRGPVILAGDFNSWGERRSQKLEKLIEPLGLK
AAIFEPDERIRVFGTPLDWVFYRGLHLKKAQSPTTNVSDHAPLMVQFELISGSTSDDETPGVHR
>Mature_303_residues
TNKQKIVVWLSAALIALLIGLLMTVLVKIPDVPRVVLGESAMVLTHQGRCFYREDSGTALDDSPIDERGVIALLVWNIHK
QSDGEWPKALWTQGLHWQLLLLQEVELNTDFTAALDNHQVSWSMMPAFRFQGLDYGVMLASRRPPLEGCGLLKVEPWIRL
PKAALYGLYALSNGEILLVVNLHGINFDPNLQEWEDQLAPLLGLVMQHRGPVILAGDFNSWGERRSQKLEKLIEPLGLKA
AIFEPDERIRVFGTPLDWVFYRGLHLKKAQSPTTNVSDHAPLMVQFELISGSTSDDETPGVHR

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=224, Percent_Identity=38.3928571428571, Blast_Score=167, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 34139; Mature: 34008

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00501 SPASE_I_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKQKIVVWLSAALIALLIGLLMTVLVKIPDVPRVVLGESAMVLTHQGRCFYREDSGTA
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCEEEECCCCCC
LDDSPIDERGVIALLVWNIHKQSDGEWPKALWTQGLHWQLLLLQEVELNTDFTAALDNHQ
CCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEECCCE
VSWSMMPAFRFQGLDYGVMLASRRPPLEGCGLLKVEPWIRLPKAALYGLYALSNGEILLV
EEEEECCHHHHCCCCEEEEEECCCCCCCCCCEEEECHHHHCCHHHHEEEEEECCCCEEEE
VNLHGINFDPNLQEWEDQLAPLLGLVMQHRGPVILAGDFNSWGERRSQKLEKLIEPLGLK
EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCE
AAIFEPDERIRVFGTPLDWVFYRGLHLKKAQSPTTNVSDHAPLMVQFELISGSTSDDETP
EEEECCCCCEEEEECCHHHHHHCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
GVHR
CCCC
>Mature Secondary Structure 
TNKQKIVVWLSAALIALLIGLLMTVLVKIPDVPRVVLGESAMVLTHQGRCFYREDSGTA
CCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCEEEECCCCCC
LDDSPIDERGVIALLVWNIHKQSDGEWPKALWTQGLHWQLLLLQEVELNTDFTAALDNHQ
CCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEECCCE
VSWSMMPAFRFQGLDYGVMLASRRPPLEGCGLLKVEPWIRLPKAALYGLYALSNGEILLV
EEEEECCHHHHCCCCEEEEEECCCCCCCCCCEEEECHHHHCCHHHHEEEEEECCCCEEEE
VNLHGINFDPNLQEWEDQLAPLLGLVMQHRGPVILAGDFNSWGERRSQKLEKLIEPLGLK
EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCE
AAIFEPDERIRVFGTPLDWVFYRGLHLKKAQSPTTNVSDHAPLMVQFELISGSTSDDETP
EEEECCCCCEEEEECCHHHHHHCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
GVHR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA