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The map label for this gene is rnpA

Identifier: 119718916

GI number: 119718916

Start: 4984884

End: 4985237

Strand: Reverse

Name: rnpA

Synonym: Noca_4699

Alternate gene names: 119718916

Gene position: 4985237-4984884 (Counterclockwise)

Preceding gene: 119718917

Following gene: 119718915

Centisome position: 99.99

GC content: 72.88

Gene sequence:

>354_bases
GTGCTGTCCGCGGCGCACCGACTCCGCGACGGCGCCACGTTCCGTGAGGCGATCCGTCGGGGCCGACGCGCCGGGCGGCA
GACCCTGGTGGTGCACCTCCTGGTCGGTGAGCCAGTTGCCTCGCAGCCGGCGCGTGTCGGCTTCGTCGTGAGCAGAGCGG
TGGGGAACGCCGTCATCCGCAACCAGGTGAAACGCCGGCTCCGACACCTCGCCCGGGAGCACGTCTCGTCGCTCCCGGGC
TCTGCTGTGCTCGTGGTCCGTGCGCTGCCGCCGGCTGCGAACGCCAGCGCGGCGGAACTCGCGCGCGATCTCGAGCGTTG
CCTCCTGCGGGTCGGTGCGGAGGTGACCGGATGA

Upstream 100 bases:

>100_bases
ACCCGTGCCGGCCGCGCGATCTTGTCCTCGCGGCGCCGCAAGGGACGCAAGAGCCTCGCCGTCTGACGGCCCACCCCGTC
CGCTCGCTGCTCCCGGCCAC

Downstream 100 bases:

>100_bases
GATACGACCCGGTGCGCTACCTGCTCATCGGCTTCCTACGCGCCTACCGGCTGTTGATCAGTCCGCTGTACGGACAGGTC
TGCCGCTATCACCCCTCCTG

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MLSAAHRLRDGATFREAIRRGRRAGRQTLVVHLLVGEPVASQPARVGFVVSRAVGNAVIRNQVKRRLRHLAREHVSSLPG
SAVLVVRALPPAANASAAELARDLERCLLRVGAEVTG

Sequences:

>Translated_117_residues
MLSAAHRLRDGATFREAIRRGRRAGRQTLVVHLLVGEPVASQPARVGFVVSRAVGNAVIRNQVKRRLRHLAREHVSSLPG
SAVLVVRALPPAANASAAELARDLERCLLRVGAEVTG
>Mature_117_residues
MLSAAHRLRDGATFREAIRRGRRAGRQTLVVHLLVGEPVASQPARVGFVVSRAVGNAVIRNQVKRRLRHLAREHVSSLPG
SAVLVVRALPPAANASAAELARDLERCLLRVGAEVTG

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_NOCSJ (A1SQV9)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_925881.1
- ProteinModelPortal:   A1SQV9
- SMR:   A1SQV9
- STRING:   A1SQV9
- GeneID:   4598243
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_4699
- eggNOG:   NOG113867
- HOGENOM:   HBG728160
- OMA:   LWDSAES
- BioCyc:   NSP35761:NOCA_4699-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 12582; Mature: 12582

Theoretical pI: Translated: 12.46; Mature: 12.46

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAAHRLRDGATFREAIRRGRRAGRQTLVVHLLVGEPVASQPARVGFVVSRAVGNAVIR
CCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
NQVKRRLRHLAREHVSSLPGSAVLVVRALPPAANASAAELARDLERCLLRVGAEVTG
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLSAAHRLRDGATFREAIRRGRRAGRQTLVVHLLVGEPVASQPARVGFVVSRAVGNAVIR
CCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
NQVKRRLRHLAREHVSSLPGSAVLVVRALPPAANASAAELARDLERCLLRVGAEVTG
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA