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The map label for this gene is araQ [H]

Identifier: 119718850

GI number: 119718850

Start: 4914068

End: 4914895

Strand: Reverse

Name: araQ [H]

Synonym: Noca_4633

Alternate gene names: 119718850

Gene position: 4914895-4914068 (Counterclockwise)

Preceding gene: 119718851

Following gene: 119718849

Centisome position: 98.58

GC content: 69.32

Gene sequence:

>828_bases
ATGTCTGAGCCCGCCCGCAGCCGGTTCCGCTCCGCGGCCGTCCTCGCCCTGGTGGTCCTGGGCGCTGTGGTCATGCTGTT
CCCGTTCCTCTGGACGGTGATCACCTCGATCACGCCCGGCGGCAGCCTGGCCGACGGTCCGACGCTGTTCGTCGACAACC
CCACGCTGGCGGCCTACCGGGCGCTGCTGGACGCGATGCCGATCTGGCGGATCCTGGTGAACTCGTTCGCGATCGCCGTC
GCCTCCACGGTCCTGCAGCTGGTCACCGGCTCGATGGCGGCCTACGGCTTCGCCCGCCTGCGCTTCCCGGGCCGCAACGT
GGTGTTCGCGCTCTATCTCGCGACGATGATGGTGCCGCTGCAGGTCCTCGTCGTCCCGCTCTTCATCGAGATGAAGACGC
TGAACCTGCAGGACACCTACCTGGGCCTGCTCGCCCCGTCGATCGCGTCGGCCTTCGGCGTCTTCCTGCTCAAGCAGGCG
GTCGAGACCGTGCCCCTCGAGCTGGACGAGGCGGCCACCATCGACGGCGCCGGGCACCTGCGGATCTTCGCCACGATCGT
GCTCCCCCTGATCCGGCCGGCACTGGCGACGGTCGCGGTCTTCGCGTTCATGGCCTCGTGGAACAGCTTCCTGTGGCCCC
TGGTGGTGATCCGCTCGCCCGAGCTGATGACCCTGCCGCTCGGCCTGGCGACCCTCCAGGGGCAGTTCACCACCCGGTGG
GACGTGGTGATGGCCGGGTCGGTGGTCTCGGTCGTCCCGATCGCGGTCGTCTACCTGCTCGCCCAACGCCACGTCGTGGC
CGGCATCGCGCACACCGGCATCAAGTGA

Upstream 100 bases:

>100_bases
GGCCGTGCCGGCGAGGCCTCCGCCCTCTCGTGGCTCCTGTTCGTCGTGATCCTCGCGATCACCGCGGTCCAGATCCGGGG
CCAGCGCCGGTGGGTGCACC

Downstream 100 bases:

>100_bases
TCGCCGACTGCTCACCCCTGACTTCCCCGGTCGCCGACGACCGCGGACGACGAAAGGAACACCGATGAAGAACAACCGCA
GGCGTCTGACGGCGATCGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSEPARSRFRSAAVLALVVLGAVVMLFPFLWTVITSITPGGSLADGPTLFVDNPTLAAYRALLDAMPIWRILVNSFAIAV
ASTVLQLVTGSMAAYGFARLRFPGRNVVFALYLATMMVPLQVLVVPLFIEMKTLNLQDTYLGLLAPSIASAFGVFLLKQA
VETVPLELDEAATIDGAGHLRIFATIVLPLIRPALATVAVFAFMASWNSFLWPLVVIRSPELMTLPLGLATLQGQFTTRW
DVVMAGSVVSVVPIAVVYLLAQRHVVAGIAHTGIK

Sequences:

>Translated_275_residues
MSEPARSRFRSAAVLALVVLGAVVMLFPFLWTVITSITPGGSLADGPTLFVDNPTLAAYRALLDAMPIWRILVNSFAIAV
ASTVLQLVTGSMAAYGFARLRFPGRNVVFALYLATMMVPLQVLVVPLFIEMKTLNLQDTYLGLLAPSIASAFGVFLLKQA
VETVPLELDEAATIDGAGHLRIFATIVLPLIRPALATVAVFAFMASWNSFLWPLVVIRSPELMTLPLGLATLQGQFTTRW
DVVMAGSVVSVVPIAVVYLLAQRHVVAGIAHTGIK
>Mature_274_residues
SEPARSRFRSAAVLALVVLGAVVMLFPFLWTVITSITPGGSLADGPTLFVDNPTLAAYRALLDAMPIWRILVNSFAIAVA
STVLQLVTGSMAAYGFARLRFPGRNVVFALYLATMMVPLQVLVVPLFIEMKTLNLQDTYLGLLAPSIASAFGVFLLKQAV
ETVPLELDEAATIDGAGHLRIFATIVLPLIRPALATVAVFAFMASWNSFLWPLVVIRSPELMTLPLGLATLQGQFTTRWD
VVMAGSVVSVVPIAVVYLLAQRHVVAGIAHTGIK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=211, Percent_Identity=36.4928909952607, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787571, Length=258, Percent_Identity=32.5581395348837, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790464, Length=216, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29534; Mature: 29403

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPARSRFRSAAVLALVVLGAVVMLFPFLWTVITSITPGGSLADGPTLFVDNPTLAAYR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHH
ALLDAMPIWRILVNSFAIAVASTVLQLVTGSMAAYGFARLRFPGRNVVFALYLATMMVPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
QVLVVPLFIEMKTLNLQDTYLGLLAPSIASAFGVFLLKQAVETVPLELDEAATIDGAGHL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
RIFATIVLPLIRPALATVAVFAFMASWNSFLWPLVVIRSPELMTLPLGLATLQGQFTTRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCHH
DVVMAGSVVSVVPIAVVYLLAQRHVVAGIAHTGIK
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SEPARSRFRSAAVLALVVLGAVVMLFPFLWTVITSITPGGSLADGPTLFVDNPTLAAYR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHH
ALLDAMPIWRILVNSFAIAVASTVLQLVTGSMAAYGFARLRFPGRNVVFALYLATMMVPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
QVLVVPLFIEMKTLNLQDTYLGLLAPSIASAFGVFLLKQAVETVPLELDEAATIDGAGHL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
RIFATIVLPLIRPALATVAVFAFMASWNSFLWPLVVIRSPELMTLPLGLATLQGQFTTRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCHH
DVVMAGSVVSVVPIAVVYLLAQRHVVAGIAHTGIK
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]